The biomappings database can be downloaded directly from GitHub.
The manually curated portions of these data are available under the CC0 1.0 Universal License.
There are three main functions exposed from
biomappings. Each loads a list of dictionaries with the mappings in each.
import biomappings true_mappings = biomappings.load_mappings() false_mappings = biomappings.load_false_mappings() predictions = biomappings.load_predictions()
Alternatively, you can use the above links to the TSVs on GitHub in with the library or programming language of your choice.
The data can also be loaded as networkx graphs with the following functions:
import biomappings true_graph = biomappings.get_true_graph() false_graph = biomappings.get_false_graph() predictions_graph = biomappings.get_predictions_graph()
The source code can be found at https://github.com/biopragmatics/biomappings. It is licensed under the MIT License.