This site summarizes the biomappings resources. They can be downloaded under the CC0-1.0 License from the open-source repository on GitHub.

Type Count
Positive 9597
Negative 1306
Unsure 74
Predicted 40647

Positive Mappings (9597)

Source Prefix Target Prefix Count
chebi mesh 2912
doid mesh 1458
mesh ncit 902
ccle efo 570
go mesh 432
mesh uniprot 378
go wikipathways 366
hp mesh 283
go reactome 222
mesh mondo 208
doid umls 190
mesh vo 154
agro agrovoc 142
mesh uberon 131
efo mesh 125
ccle cellosaurus 114
go kegg.pathway 113
hgnc mesh 102
doid efo 96
cl mesh 81
pr uniprot.chain 81
reactome wikipathways 73
kegg.pathway wikipathways 70
kegg.pathway reactome 61
ncbiprotein uniprot.chain 26
kegg.pathway mesh 25
idomal vsmo 23
ido idomal 20
apollosv ido 18
idomal vo 18
mesh wikipathways 18
mesh pubchem.compound 17
chebi idomal 14
wikipathways wikipathways 10
apollosv idomal 8
idomal ncbitaxon 8
go idomal 8
mesh reactome 8
chebi ncit 6
idomal uberon 6
ncit vo 6
hp ido 5
doid ido 5
hp idomal 5
ccle depmap 4
ido vido 4
pr vo 4
kegg.pathway kegg.pathway 3
mesh umls 3
apollosv vsmo 2
apollosv stato 2
apollosv dc 2
bto ccle 2
cemo ncit 2
cido idocovid19 2
cido vo 2
cido dron 2
chebi ido 2
ido vsmo 2
doid idomal 2
hp oae 2
chebi vo 2
apollosv envo 1
apollosv vo 1
apollosv ncit 1
apollosv doid 1
apollosv iao 1
apollosv oboinowl 1
cido idomal 1
chebi cido 1
go ncit 1
ido obi 1
envo ido 1
idomal maxo 1
idomal ndfrt 1
cl idomal 1
idomal opmi 1
idomal obi 1
idomal miro 1
idomal pr 1
caro idomal 1
fma idomal 1
dron oae 1
doid oae 1
idomal oae 1
oae opmi 1
oae obi 1
maxo oae 1
mpath oae 1
mesh pfam 1
hp vido 1
vido vsmo 1
ido vo 1
idocovid19 vo 1
commoncoreontology vo 1
ogg vo 1
efo wikipathways 1

Negative Mappings (1306)

Source Prefix Target Prefix Count
mesh reactome 218
doid mesh 198
go mesh 102
go reactome 91
chebi reactome 85
kegg.pathway mesh 77
mesh vo 70
ccle cellosaurus 59
fplx reactome 49
mesh wikipathways 45
cl mesh 38
doid umls 36
efo mesh 29
chebi mesh 27
hgnc mesh 22
agro agrovoc 20
go kegg.pathway 16
mesh ncit 14
hgnc reactome 11
ccle efo 10
pr uniprot.chain 9
pr vo 9
hp mesh 8
mesh mondo 8
doid efo 7
fplx wikipathways 7
uberon vo 6
doid vo 6
chebi vo 5
doid reactome 3
mesh uberon 3
hgnc wikipathways 3
apollosv nbo 2
idomal vo 2
ncit vo 2
chebi wikipathways 2
doid wikipathways 2
apollosv ncit 1
ccle depmap 1
mesh umls 1
hp vo 1
reactome wikipathways 1

Unsure Mappings (74)

Source Prefix Target Prefix Count
doid mesh 27
ccle cellosaurus 13
ccle efo 6
go mesh 5
mesh vo 5
mesh ncit 4
ccle depmap 2
cl mesh 2
doid umls 2
efo mesh 2
apollosv ncit 1
chebi mesh 1
doid ido 1
hgnc mesh 1
idomal vo 1
pr vo 1

Predictions (40647)

Source Prefix Target Prefix Count
chebi mesh 11842
mesh ncit 11737
mesh uniprot 10970
doid umls 2339
wikipathways wikipathways 1685
hgnc mesh 1367
hp mesh 233
efo mesh 145
mesh mondo 76
mesh uberon 68
doid mesh 55
doid efo 39
doid idomal 10
go idomal 10
idomal ncbitaxon 10
idomal pr 8
chebi ido 7
idomal uberon 6
chebi idomal 4
apollosv pato 2
ido pato 2
doid idocovid19 2
idocovid19 ncit 2
bfo idomal 2
idomal obo 2
idomal maxo 2
idomal obi 2
idomal ncit 2
hp idomal 2
apollosv vsmo 1
apollosv ncit 1
apollosv go 1
cemo pato 1
cemo ncit 1
go ido 1
ido vsmo 1
ido obi 1
ido idomal 1
idomal pato 1
idomal vsmo 1
idomal nbo 1
idomal ogms 1
idomal pco 1
caro idomal 1
doid vido 1

Contributors

Contributor ORCID Curation Count
Ben Gyori 0000-0001-9439-5346 5268
Charles Tapley Hoyt 0000-0003-4423-4370 3635
Amelia Hoyt 0000-0003-1307-2508 1695
Daniel Domingo-Fernandez 0000-0002-2046-6145 216
Krishna Udaiwal 0000-0002-2627-0696 162
Christopher Mungall 0000-0002-6601-2165 1