This site summarizes the biomappings resources. They can be downloaded under the CC0-1.0 License from the open-source repository on GitHub.

Positive Mappings (5728)

Source Prefix Target Prefix Count
doid mesh 1303
chebi mesh 1174
mesh ncit 529
ccle efo 498
go mesh 403
mesh uniprot 370
go wikipathways 366
go reactome 222
go kegg.pathway 113
doid umls 111
ccle cellosaurus 106
hgnc mesh 102
pr uniprot.chain 81
reactome wikipathways 73
kegg.pathway wikipathways 70
kegg.pathway reactome 61
ncbiprotein uniprot.chain 26
kegg.pathway mesh 25
mesh wikipathways 18
mesh pubchem.compound 17
efo mesh 14
hp mesh 10
wikipathways wikipathways 9
mesh reactome 8
chebi ncit 6
kegg.pathway kegg.pathway 3
mesh umls 3
bto ccle 2
ccle depmap 1
doid efo 1
go ncit 1
mesh pfam 1
efo wikipathways 1

Negative Mappings (1000)

Source Prefix Target Prefix Count
mesh reactome 218
doid mesh 189
go mesh 91
chebi reactome 85
kegg.pathway mesh 77
go reactome 71
fplx reactome 49
mesh wikipathways 45
doid umls 35
ccle cellosaurus 27
go kegg.pathway 16
hgnc mesh 14
efo mesh 13
hgnc reactome 11
pr uniprot.chain 9
ccle efo 8
mesh ncit 8
chebi mesh 7
doid efo 7
fplx wikipathways 7
doid reactome 3
hgnc wikipathways 3
chebi wikipathways 2
doid wikipathways 2
ccle depmap 1
mesh umls 1
reactome wikipathways 1

Unsure Mappings (38)

Source Prefix Target Prefix Count
doid mesh 26
ccle cellosaurus 5
ccle efo 3
ccle depmap 2
mesh ncit 2

Predictions (30974)

Source Prefix Target Prefix Count
mesh ncit 12118
mesh uniprot 10978
chebi mesh 2733
doid umls 2421
hgnc mesh 1376
doid mesh 386
hp mesh 362
efo mesh 274
doid efo 134
ccle efo 77
ccle cellosaurus 48
go mesh 44
go reactome 20
ccle depmap 3

Contributors

Contributor ORCID Curation Count
Ben Gyori 0000-0001-9439-5346 2990
Charles Tapley Hoyt 0000-0003-4423-4370 1862
Amelia Hoyt 0000-0003-1307-2508 1697
Daniel Domingo-Fernandez 0000-0002-2046-6145 216
Christopher Mungall 0000-0002-6601-2165 1