This site summarizes the biomappings resources. They can be downloaded under the CC0-1.0 License from the open-source repository on GitHub.

Type	Count
Positive	13540
Negative	1993
Unsure	112
Predicted	111164

Positive Mappings (13540)

Source Prefix	Target Prefix	Count
chebi	mesh	3484
doid	mesh	1505
mesh	ncit	933
ccle	efo	570
aro	mesh	511
go	mesh	456
efo	mesh	442
mesh	uniprot	389
go	wikipathways	366
hp	mesh	346
mesh	mondo	324
go	reactome	222
bto	mesh	207
doid	umls	194
mesh	vo	187
mesh	uberon	153
mesh	xlmod	153
dron	vo	145
agro	agrovoc	142
maxo	mesh	139
envo	mesh	125
ccle	cellosaurus	114
go	kegg.pathway	113
hgnc	mesh	111
chmo	goldbook	100
doid	efo	96
chmo	mesh	83
cl	mesh	81
pr	uniprot.chain	81
bto	cl	75
mesh	sibo	74
reactome	wikipathways	73
kegg.pathway	wikipathways	70
envo	oeo	68
kegg.pathway	reactome	61
mesh	txpo	61
bto	uberon	55
cvx	vo	47
mesh	mi	46
mesh	mmo	41
aio	ito	40
mesh	so	40
drugbank	vo	40
fix	mesh	37
chebi	iconclass	37
hao	mesh	31
ncbiprotein	uniprot.chain	26
kegg.pathway	mesh	25
fplx	mesh	24
idomal	vsmo	23
adcad	gsso	22
mesh	ms	21
apo	mesh	19
chmo	fbbi	19
cpt	mesh	19
chebi	efo	18
mesh	wikipathways	18
afpo	mesh	17
idomal	ncbitaxon	17
mesh	pubchem.compound	17
chebi	idomal	16
dron	ncbitaxon	15
ido	idomal	15
schema	vivo	15
clao	mesh	14
clo	mesh	14
cvx	mesh	14
iconclass	obi	14
lepao	mesh	14
apollosv	ido	13
icd10	mesh	13
chmo	iconclass	13
go	idomal	12
idomal	vo	11
mesh	oae	11
gsso	mesh	10
wikipathways	wikipathways	10
chebi	ido	9
mesh	ogms	9
mesh	pbpko	9
apollosv	mesh	8
cpt	vo	8
gsso	vivo	8
doid	idomal	8
mesh	oarcs	8
mesh	obcs	8
mesh	reactome	8
amphx	mesh	7
ccso	vivo	7
dron	mesh	7
idomal	uberon	7
apollosv	idomal	6
chebi	ncit	6
ecocore	mesh	6
hp	idomal	6
ncit	vo	6
aism	mesh	5
clo	efo	5
gsso	schema	5
hp	ido	5
doid	ido	5
idomal	pr	5
mco	mesh	5
mesh	stato	5
agro	mesh	4
ccle	depmap	4
kim.hcrt	vivo	4
kim.hcrt	schema	4
mesh	obi	4
pr	vo	4
ans.educationlevel	schema	3
ccso	schema	3
cellosaurus	clo	3
hancestro	mesh	3
ido	vido	3
idomal	obi	3
kegg.pathway	kegg.pathway	3
mesh	umls	3
mesh	vt	3
ado	mesh	2
apollosv	vsmo	2
apollosv	stato	2
apollosv	dc	2
biomodels.kisao	mesh	2
bmont	mesh	2
bto	ccle	2
ccso	modalia	2
ccso	gsso	2
cemo	ncit	2
cido	idocovid19	2
cido	dron	2
cteno	mesh	2
cto	mesh	2
dideo	mesh	2
duo	mesh	2
ecto	mesh	2
fao	mesh	2
genepio	mesh	2
ido	pato	2
ido	vsmo	2
lrmi	schema	2
modalia	schema	2
modalia	vivo	2
hp	oae	2
schema	t4fs	2
mesh	slso	2
t4fs	vivo	2
chebi	vo	2
mesh	vto	2
apollosv	envo	1
apollosv	vo	1
apollosv	ncit	1
apollosv	doid	1
apollosv	iao	1
apollosv	oboinowl	1
bco	mesh	1
ccso	t4fs	1
cdno	mesh	1
cido	idomal	1
cido	vo	1
chebi	cido	1
dron	efo	1
fbcv	mesh	1
fideo	mesh	1
go	ncit	1
gsso	t4fs	1
gsso	modalia	1
hso	mesh	1
iana.mediatype	modalia	1
iana.mediatype	vivo	1
ido	obi	1
go	ido	1
envo	ido	1
doid	idocovid19	1
idocovid19	ncit	1
idomal	maxo	1
idomal	ndfrt	1
cl	idomal	1
idomal	nbo	1
bfo	idomal	1
idomal	obo	1
idomal	opmi	1
idomal	miro	1
idomal	ncit	1
idomal	pco	1
caro	idomal	1
fma	idomal	1
kestrelo	vo	1
kim.educationlevel	vivo	1
kim.esv	schema	1
kim.esv	vivo	1
kim.hcrt	t4fs	1
modalia	t4fs	1
dron	oae	1
doid	oae	1
idomal	oae	1
oae	opmi	1
oae	obi	1
maxo	oae	1
mpath	oae	1
obi	vo	1
obo	opmi	1
mesh	pato	1
mesh	pfam	1
mesh	phipo	1
mesh	ppo	1
mesh	scdo	1
ncit	taxrank	1
snomedct	taxrank	1
taxrank	tdwg.taxonrank	1
taxrank	umls	1
hp	vido	1
vido	vsmo	1
doid	vido	1
ido	vo	1
idocovid19	vo	1
commoncoreontology	vo	1
ogg	vo	1
obo	wbbt	1
efo	wikipathways	1

Negative Mappings (1993)

Source Prefix	Target Prefix	Count
mesh	reactome	218
doid	mesh	198
chebi	efo	129
go	mesh	102
go	reactome	91
chebi	reactome	85
kegg.pathway	mesh	77
mesh	vo	75
ccle	cellosaurus	59
chebi	mesh	52
efo	ncbitaxon	50
fplx	reactome	49
mesh	wikipathways	45
envo	mesh	41
cl	mesh	38
hgnc	mesh	38
ncbitaxon	pfam	38
doid	umls	36
envo	ncbitaxon	34
chebi	iconclass	29
efo	mesh	29
mesh	mondo	22
chmo	ncbitaxon	21
chmo	iconclass	21
agro	agrovoc	20
icd10	mesh	20
doid	ncbitaxon	17
go	kegg.pathway	16
mesh	ncit	16
drugbank	vo	15
chmo	mesh	12
mi	ncbitaxon	12
aro	mesh	11
hgnc	reactome	11
ccle	efo	10
schema	vivo	10
fix	mesh	9
interpro	ncbitaxon	9
hp	mesh	9
pr	uniprot.chain	9
pr	vo	9
cpt	mesh	8
clo	mesh	7
doid	efo	7
fplx	wikipathways	7
gsso	iana.mediatype	6
go	idomal	6
ito	ncbitaxon	6
mesh	ms	6
uberon	vo	6
doid	vo	6
ncbitaxon	obi	5
chebi	vo	5
afpo	mesh	4
cellosaurus	clo	4
cvx	vo	4
iana.mediatype	schema	4
doid	idomal	4
idomal	pr	4
bto	cl	3
chmo	goldbook	3
isced2013	schema	3
ito	mi	3
envo	oeo	3
doid	reactome	3
mesh	uberon	3
bto	uberon	3
hgnc	wikipathways	3
agro	mesh	2
apo	mesh	2
apollosv	ncit	2
apollosv	nbo	2
cvx	mesh	2
gsso	modalia	2
hp	ncbitaxon	2
idomal	maxo	2
idomal	uberon	2
mco	mesh	2
mesh	mi	2
miapa	ncbitaxon	2
mesh	ontoavida	2
efo	pfam	2
mesh	ro	2
mesh	so	2
ncit	vo	2
mesh	vto	2
chebi	wikipathways	2
doid	wikipathways	2
mesh	xlmod	2
aism	mesh	1
amphx	mesh	1
apollosv	pato	1
bto	ncbitaxon	1
ccle	depmap	1
ccso	gsso	1
cl	ncbitaxon	1
clo	efo	1
cpt	vo	1
cvx	umls	1
gsso	schema	1
ido	obi	1
ido	ncbitaxon	1
ido	idomal	1
idocovid19	ncit	1
doid	idocovid19	1
idomal	vsmo	1
idomal	ogms	1
idomal	ncbitaxon	1
idomal	vo	1
hp	idomal	1
caro	idomal	1
kim.hcrt	t4fs	1
mesh	nomen	1
ncbitaxon	oae	1
mesh	obi	1
ito	pfam	1
schema	t4fs	1
mesh	stato	1
mesh	txpo	1
mesh	umls	1
hp	vo	1
reactome	wikipathways	1

Unsure Mappings (112)

Source Prefix	Target Prefix	Count
doid	mesh	27
ccle	cellosaurus	13
ccle	efo	6
go	mesh	5
mesh	mondo	5
mesh	vo	5
mesh	ncit	4
bto	uberon	4
chebi	mesh	3
idomal	uberon	3
ccle	depmap	2
cl	mesh	2
doid	umls	2
envo	mesh	2
chebi	idomal	2
aio	ito	2
efo	mesh	2
ncbitaxon	obi	2
apollosv	ncit	1
apollosv	pato	1
apollosv	vsmo	1
apollosv	go	1
bto	cl	1
cemo	pato	1
cemo	ncit	1
cpt	mesh	1
envo	ncbitaxon	1
chmo	goldbook	1
gsso	vivo	1
hso	mesh	1
doid	ido	1
idomal	pato	1
idomal	ncit	1
hgnc	mesh	1
modalia	vivo	1
mesh	nomen	1
drugbank	vo	1
idomal	vo	1
pr	vo	1

Predictions (111164)

Source Prefix	Target Prefix	Count
chebi	mesh	32670
mesh	uniprot	13686
mesh	ncit	11704
icd11	mesh	10359
mesh	pr	9958
hgnc	mesh	2679
hp	mesh	2431
doid	umls	2335
wikipathways	wikipathways	1685
mesh	mondo	1329
mesh	vto	1305
dron	mesh	1174
gsso	mesh	1149
go	mesh	1114
icd10	mesh	1106
mesh	vbo	1069
mesh	mp	1020
ccle	cellosaurus	994
bto	mesh	899
mesh	xco	623
efo	hp	462
mesh	ncro	455
mesh	mod	446
chmo	goldbook	430
mesh	mpath	396
mesh	uberon	378
fbbt	mesh	340
emapa	mesh	329
envo	mesh	329
mesh	symp	325
mesh	xao	318
efo	mesh	317
doid	mesh	307
efo	mondo	304
mesh	tto	273
mesh	so	255
mesh	zfa	242
mesh	mi	231
doid	mondo	223
mesh	nbo	220
hancestro	mesh	216
aro	mesh	206
fplx	mesh	204
ma	mesh	200
mesh	xlmod	197
mesh	obi	194
cl	mesh	188
mesh	txpo	184
maxo	mesh	160
fbcv	mesh	156
chmo	mesh	149
mesh	scdo	126
clao	mesh	107
fbbi	mesh	106
hao	mesh	102
mesh	pato	101
mesh	spd	93
mesh	plana	92
mesh	pw	89
ecao	mesh	85
eco	mesh	84
exo	mesh	84
cmo	mesh	81
mesh	vo	78
mesh	wbbt	76
mesh	occo	72
doid	efo	60
mesh	sibo	60
mesh	mmo	59
mesh	vario	58
mesh	sbo	57
fix	mesh	55
mesh	vt	52
mesh	rex	51
ccle	efo	48
cido	mesh	47
mesh	rs	44
mesh	omp	43
mesh	po	43
mesh	zeco	38
clo	efo	37
mesh	oba	37
mesh	opmi	37
ido	mesh	36
mesh	ons	36
mesh	wbphenotype	36
mesh	ms	35
envo	oeo	35
mesh	t4fs	34
genepio	mesh	32
mesh	mop	30
mesh	rbo	30
mesh	oarcs	27
mesh	mfoem	26
gno	mesh	24
mesh	poro	24
mesh	stato	24
cvdo	mesh	21
mesh	obcs	21
clo	mesh	20
clyh	mesh	20
exmo	mesh	20
mesh	oae	19
geno	mesh	18
apo	mesh	17
ino	mesh	17
mesh	mf	17
ecocore	mesh	16
mesh	uo	16
mesh	wbls	16
apollosv	mesh	15
mesh	oostt	14
emro	mesh	13
fideo	mesh	13
hsapdv	mesh	13
lepao	mesh	13
mesh	pso	12
chebi	efo	11
mesh	ohmi	11
cdno	mesh	10
fypo	mesh	10
gecko	mesh	10
mesh	ogms	10
mesh	pcl	10
fao	mesh	9
mesh	pbpko	9
mesh	pco	9
bto	cl	8
mesh	to	8
flopo	mesh	7
mesh	mro	7
mesh	proco	7
mesh	taxrank	7
agro	mesh	6
aism	mesh	6
amphx	mesh	6
biomodels.kisao	mesh	6
bmont	mesh	6
cellosaurus	clo	6
cdao	mesh	5
fbdv	mesh	5
gsso	obo	5
iceo	mesh	5
caro	uberon	5
mesh	xpo	5
afpo	mesh	4
ddanat	mesh	4
hom	mesh	4
mesh	ro	4
ado	mesh	3
bfo	mesh	3
mesh	prefer	3
mesh	zfs	3
cio	mesh	2
colao	mesh	2
dideo	mesh	2
exo	obo	2
hso	mesh	2
mesh	ontoavida	2
mesh	peco	2
mesh	phipo	2
mesh	psdo	2
mesh	rxno	2
ccle	cl	1
cob	obo	1
cob	mesh	1
cteno	mesh	1
cto	mesh	1
ddpheno	mesh	1
ecto	mesh	1
fbbt	obo	1
gallont	mesh	1
genepio	obo	1
mi	obo	1
mesh	miapa	1
mesh	mmusdv	1
mp	obo	1
mesh	nomen	1
obo	ogms	1
mesh	ohpi	1
obo	pw	1
mesh	slso	1
mesh	trans	1
obo	uberon	1
obo	wbbt	1

Contributors

Contributor	ORCID	Curation Count
Charles Tapley Hoyt	0000-0003-4423-4370	7402
Ben Gyori	0000-0001-9439-5346	6049
Amelia Hoyt	0000-0003-1307-2508	1670
Daniel Domingo-Fernandez	0000-0002-2046-6145	216
Krishna Udaiwal	0000-0002-2627-0696	162
Sumir Pandit	0000-0002-1216-4761	20
Harshit Soni	0009-0007-1189-4598	13
Christopher Mungall	0000-0002-6601-2165	1