This site summarizes the biomappings resources. They can be downloaded under the CC0-1.0 License from the open-source repository on GitHub.

Type	Count
Positive	11025
Negative	1606
Unsure	102
Predicted	53769

Positive Mappings (11025)

Source Prefix	Target Prefix	Count
chebi	mesh	3385
doid	mesh	1502
mesh	ncit	905
ccle	efo	570
go	mesh	449
mesh	uniprot	387
go	wikipathways	366
hp	mesh	346
efo	mesh	267
mesh	mondo	224
go	reactome	222
doid	umls	190
mesh	vo	172
dron	vo	145
agro	agrovoc	142
mesh	uberon	131
maxo	mesh	129
ccle	cellosaurus	114
go	kegg.pathway	113
hgnc	mesh	111
doid	efo	96
cl	mesh	81
pr	uniprot.chain	81
bto	cl	74
reactome	wikipathways	73
kegg.pathway	wikipathways	70
kegg.pathway	reactome	61
bto	uberon	54
cvx	vo	47
aio	ito	40
drugbank	vo	40
ncbiprotein	uniprot.chain	26
kegg.pathway	mesh	25
idomal	vsmo	23
fplx	mesh	23
cpt	mesh	19
mesh	wikipathways	18
mesh	pubchem.compound	17
chebi	idomal	16
dron	ncbitaxon	15
ido	idomal	15
clo	mesh	14
cvx	mesh	14
apollosv	ido	13
idomal	ncbitaxon	13
idomal	vo	11
wikipathways	wikipathways	10
chebi	ido	9
go	idomal	9
cpt	vo	8
mesh	reactome	8
apollosv	idomal	6
chebi	ncit	6
hp	idomal	6
idomal	uberon	6
ncit	vo	6
hp	ido	5
doid	ido	5
ccle	depmap	4
clo	efo	4
doid	idomal	4
idomal	pr	4
pr	vo	4
cellosaurus	clo	3
ido	vido	3
kegg.pathway	kegg.pathway	3
mesh	umls	3
apollosv	vsmo	2
apollosv	stato	2
apollosv	dc	2
bto	ccle	2
cemo	ncit	2
cido	idocovid19	2
cido	dron	2
ido	vsmo	2
idomal	obi	2
hp	oae	2
chebi	vo	2
apollosv	envo	1
apollosv	vo	1
apollosv	ncit	1
apollosv	doid	1
apollosv	iao	1
apollosv	oboinowl	1
cido	idomal	1
cido	vo	1
chebi	cido	1
dron	efo	1
go	ncit	1
ido	obi	1
envo	ido	1
idomal	maxo	1
idomal	ndfrt	1
cl	idomal	1
idomal	opmi	1
idomal	miro	1
idomal	pco	1
caro	idomal	1
fma	idomal	1
kestrelo	vo	1
dron	oae	1
doid	oae	1
idomal	oae	1
oae	opmi	1
oae	obi	1
maxo	oae	1
mpath	oae	1
obi	vo	1
mesh	pfam	1
hp	vido	1
vido	vsmo	1
ido	vo	1
idocovid19	vo	1
commoncoreontology	vo	1
ogg	vo	1
efo	wikipathways	1

Negative Mappings (1606)

Source Prefix	Target Prefix	Count
mesh	reactome	218
doid	mesh	198
go	mesh	102
go	reactome	91
chebi	reactome	85
kegg.pathway	mesh	77
mesh	vo	74
ccle	cellosaurus	59
chebi	mesh	52
efo	ncbitaxon	50
fplx	reactome	49
mesh	wikipathways	45
cl	mesh	38
ncbitaxon	pfam	38
doid	umls	36
envo	ncbitaxon	34
efo	mesh	29
hgnc	mesh	25
chmo	ncbitaxon	21
agro	agrovoc	20
doid	ncbitaxon	17
go	kegg.pathway	16
mesh	ncit	15
drugbank	vo	15
mi	ncbitaxon	12
mesh	mondo	11
hgnc	reactome	11
ccle	efo	10
interpro	ncbitaxon	9
hp	mesh	9
pr	uniprot.chain	9
pr	vo	9
cpt	mesh	8
clo	mesh	7
doid	efo	7
fplx	wikipathways	7
ito	ncbitaxon	6
uberon	vo	6
doid	vo	6
ncbitaxon	obi	5
chebi	vo	5
cellosaurus	clo	4
cvx	vo	4
bto	cl	3
doid	idomal	3
ito	mi	3
doid	reactome	3
mesh	uberon	3
bto	uberon	3
hgnc	wikipathways	3
apollosv	ncit	2
apollosv	nbo	2
cvx	mesh	2
hp	ncbitaxon	2
idomal	pr	2
miapa	ncbitaxon	2
efo	pfam	2
ncit	vo	2
chebi	wikipathways	2
doid	wikipathways	2
apollosv	pato	1
bto	ncbitaxon	1
ccle	depmap	1
cl	ncbitaxon	1
clo	efo	1
cpt	vo	1
cvx	umls	1
ido	ncbitaxon	1
idomal	maxo	1
idomal	ncbitaxon	1
idomal	vo	1
ncbitaxon	oae	1
ito	pfam	1
mesh	umls	1
hp	vo	1
reactome	wikipathways	1

Unsure Mappings (102)

Source Prefix	Target Prefix	Count
doid	mesh	27
ccle	cellosaurus	13
ccle	efo	6
go	mesh	5
mesh	mondo	5
mesh	vo	5
mesh	ncit	4
bto	uberon	4
chebi	mesh	3
ccle	depmap	2
cl	mesh	2
doid	umls	2
chebi	idomal	2
aio	ito	2
efo	mesh	2
ncbitaxon	obi	2
apollosv	ncit	1
apollosv	pato	1
apollosv	vsmo	1
apollosv	go	1
bto	cl	1
cemo	pato	1
cemo	ncit	1
cpt	mesh	1
envo	ncbitaxon	1
doid	ido	1
idomal	ncit	1
idomal	uberon	1
hgnc	mesh	1
drugbank	vo	1
idomal	vo	1
pr	vo	1

Predictions (53769)

Source Prefix	Target Prefix	Count
chebi	mesh	22714
mesh	ncit	11733
mesh	uniprot	10961
hgnc	mesh	2694
doid	umls	2339
wikipathways	wikipathways	1685
efo	mesh	492
hp	mesh	316
fplx	mesh	205
doid	mesh	187
go	mesh	71
mesh	uberon	68
maxo	mesh	66
mesh	vo	56
mesh	mondo	52
doid	efo	39
clo	efo	30
go	idomal	9
cellosaurus	clo	6
clo	mesh	5
doid	idomal	5
idomal	uberon	5
idomal	ncbitaxon	4
idomal	pr	3
ido	pato	2
doid	idocovid19	2
idocovid19	ncit	2
bfo	idomal	2
idomal	obo	2
go	ido	1
ido	vsmo	1
ido	obi	1
ido	idomal	1
idomal	pato	1
idomal	vsmo	1
idomal	nbo	1
idomal	obi	1
idomal	ogms	1
idomal	maxo	1
hp	idomal	1
idomal	ncit	1
caro	idomal	1
doid	vido	1

Contributors

Contributor	ORCID	Curation Count
Ben Gyori	0000-0001-9439-5346	5783
Charles Tapley Hoyt	0000-0003-4423-4370	4851
Amelia Hoyt	0000-0003-1307-2508	1695
Daniel Domingo-Fernandez	0000-0002-2046-6145	216
Krishna Udaiwal	0000-0002-2627-0696	162
Sumir Pandit	0000-0002-1216-4761	25
Christopher Mungall	0000-0002-6601-2165	1