Summary of Errors

  • DisGeNet - failed to resolve DisGeNet
  • Pathway Commons - issue parsing Pathway Commons: could not find an element matching args=({‘class’: ‘boost’},) and kwargs={}
  • DrugBank - failed to resolve DrugBank
  • International Classification of Diseases, 10th Revision - failed to resolve International Classification of Diseases, 10th Revision
  • International Classification of Diseases, 11th Revision - failed to resolve International Classification of Diseases, 11th Revision
  • International Classification of Functioning, Disability and Health - failed to resolve International Classification of Functioning, Disability and Health
  • Zebrafish Information Network - failed to resolve Zebrafish Information Network

DisGeNet

Using class: DisGeNetGetter

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 974, in json
    return complexjson.loads(self.text, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/json/__init__.py", line 346, in loads
    return _default_decoder.decode(s)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/json/decoder.py", line 338, in decode
    obj, end = self.raw_decode(s, idx=_w(s, 0).end())
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/json/decoder.py", line 356, in raw_decode
    raise JSONDecodeError("Expecting value", s, err.value) from None
json.decoder.JSONDecodeError: Expecting value: line 1 column 1 (char 0)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 246, in _iter_versions
    yv = resolve(cls.name)
         ^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 173, in resolve
    return _resolve_helper_cached(name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
    return _calc_entry(core, key, func, args, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
    func_res = func(*args, **kwds)
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 180, in _resolve_helper_cached
    return _resolve_helper(name)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 186, in _resolve_helper
    return getter.resolve()
           ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 224, in resolve
    version=cls.version,
            ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 102, in version
    if isinstance(cls._cache_prop, str):
                  ^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 96, in _cache_prop
    cls._cache = cls().get()
                 ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/disgenet.py", line 24, in get
    res_json = res.json()
               ^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 978, in json
    raise RequestsJSONDecodeError(e.msg, e.doc, e.pos)
requests.exceptions.JSONDecodeError: Expecting value: line 1 column 1 (char 0)

Pathway Commons

Using class: PathwayCommonsGetter

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 246, in _iter_versions
    yv = resolve(cls.name)
         ^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 173, in resolve
    return _resolve_helper_cached(name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
    return _calc_entry(core, key, func, args, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
    func_res = func(*args, **kwds)
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 180, in _resolve_helper_cached
    return _resolve_helper(name)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 186, in _resolve_helper
    return getter.resolve()
           ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 224, in resolve
    version=cls.version,
            ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 102, in version
    if isinstance(cls._cache_prop, str):
                  ^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 96, in _cache_prop
    cls._cache = cls().get()
                 ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/pathwaycommons.py", line 21, in get
    boost = find(soup, {"class": "boost"})
            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 71, in find
    raise ValueError(f"could not find an element matching {args=} and {kwargs=}")
ValueError: could not find an element matching args=({'class': 'boost'},) and kwargs={}

DrugBank

Using class: DrugBankGetter

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 246, in _iter_versions
    yv = resolve(cls.name)
         ^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 173, in resolve
    return _resolve_helper_cached(name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
    return _calc_entry(core, key, func, args, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
    func_res = func(*args, **kwds)
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 180, in _resolve_helper_cached
    return _resolve_helper(name)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 186, in _resolve_helper
    return getter.resolve()
           ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 224, in resolve
    version=cls.version,
            ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 102, in version
    if isinstance(cls._cache_prop, str):
                  ^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 96, in _cache_prop
    cls._cache = cls().get()
                 ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/drugbank.py", line 28, in get
    res.raise_for_status()
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/models.py", line 1024, in raise_for_status
    raise HTTPError(http_error_msg, response=self)
requests.exceptions.HTTPError: 403 Client Error: Forbidden for url: https://go.drugbank.com/releases.json

International Classification of Diseases, 10th Revision

Using class: ICD10Getter

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 464, in _make_request
    self._validate_conn(conn)
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 1093, in _validate_conn
    conn.connect()
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 741, in connect
    sock_and_verified = _ssl_wrap_socket_and_match_hostname(
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 920, in _ssl_wrap_socket_and_match_hostname
    ssl_sock = ssl_wrap_socket(
               ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 460, in ssl_wrap_socket
    ssl_sock = _ssl_wrap_socket_impl(sock, context, tls_in_tls, server_hostname)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 504, in _ssl_wrap_socket_impl
    return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 455, in wrap_socket
    return self.sslsocket_class._create(
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 1041, in _create
    self.do_handshake()
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 1319, in do_handshake
    self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 787, in urlopen
    response = self._make_request(
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 488, in _make_request
    raise new_e
urllib3.exceptions.SSLError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 667, in send
    resp = conn.urlopen(
           ^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 841, in urlopen
    retries = retries.increment(
              ^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/retry.py", line 519, in increment
    raise MaxRetryError(_pool, url, reason) from reason  # type: ignore[arg-type]
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='icd.who.int', port=443): Max retries exceeded with url: /browse10/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)')))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 246, in _iter_versions
    yv = resolve(cls.name)
         ^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 173, in resolve
    return _resolve_helper_cached(name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
    return _calc_entry(core, key, func, args, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
    func_res = func(*args, **kwds)
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 180, in _resolve_helper_cached
    return _resolve_helper(name)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 186, in _resolve_helper
    return getter.resolve()
           ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 224, in resolve
    version=cls.version,
            ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 102, in version
    if isinstance(cls._cache_prop, str):
                  ^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 96, in _cache_prop
    cls._cache = cls().get()
                 ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/icd10.py", line 24, in get
    response = requests.get(URL, allow_redirects=True, timeout=15)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/api.py", line 73, in get
    return request("get", url, params=params, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/api.py", line 59, in request
    return session.request(method=method, url=url, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
    resp = self.send(prep, **send_kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 703, in send
    r = adapter.send(request, **kwargs)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 698, in send
    raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='icd.who.int', port=443): Max retries exceeded with url: /browse10/ (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)')))

International Classification of Diseases, 11th Revision

Using class: ICD11Getter

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 464, in _make_request
    self._validate_conn(conn)
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 1093, in _validate_conn
    conn.connect()
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 741, in connect
    sock_and_verified = _ssl_wrap_socket_and_match_hostname(
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 920, in _ssl_wrap_socket_and_match_hostname
    ssl_sock = ssl_wrap_socket(
               ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 460, in ssl_wrap_socket
    ssl_sock = _ssl_wrap_socket_impl(sock, context, tls_in_tls, server_hostname)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 504, in _ssl_wrap_socket_impl
    return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 455, in wrap_socket
    return self.sslsocket_class._create(
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 1041, in _create
    self.do_handshake()
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 1319, in do_handshake
    self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 787, in urlopen
    response = self._make_request(
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 488, in _make_request
    raise new_e
urllib3.exceptions.SSLError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 667, in send
    resp = conn.urlopen(
           ^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 841, in urlopen
    retries = retries.increment(
              ^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/retry.py", line 519, in increment
    raise MaxRetryError(_pool, url, reason) from reason  # type: ignore[arg-type]
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='icd.who.int', port=443): Max retries exceeded with url: /browse/latest-release/mms/en (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)')))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 246, in _iter_versions
    yv = resolve(cls.name)
         ^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 173, in resolve
    return _resolve_helper_cached(name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
    return _calc_entry(core, key, func, args, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
    func_res = func(*args, **kwds)
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 180, in _resolve_helper_cached
    return _resolve_helper(name)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 186, in _resolve_helper
    return getter.resolve()
           ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 224, in resolve
    version=cls.version,
            ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 102, in version
    if isinstance(cls._cache_prop, str):
                  ^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 96, in _cache_prop
    cls._cache = cls().get()
                 ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/icd11.py", line 24, in get
    response = requests.get(URL, allow_redirects=True, timeout=15)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/api.py", line 73, in get
    return request("get", url, params=params, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/api.py", line 59, in request
    return session.request(method=method, url=url, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
    resp = self.send(prep, **send_kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 703, in send
    r = adapter.send(request, **kwargs)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 698, in send
    raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='icd.who.int', port=443): Max retries exceeded with url: /browse/latest-release/mms/en (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)')))

International Classification of Functioning, Disability and Health

Using class: ICFGetter

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 464, in _make_request
    self._validate_conn(conn)
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 1093, in _validate_conn
    conn.connect()
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 741, in connect
    sock_and_verified = _ssl_wrap_socket_and_match_hostname(
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 920, in _ssl_wrap_socket_and_match_hostname
    ssl_sock = ssl_wrap_socket(
               ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 460, in ssl_wrap_socket
    ssl_sock = _ssl_wrap_socket_impl(sock, context, tls_in_tls, server_hostname)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/ssl_.py", line 504, in _ssl_wrap_socket_impl
    return ssl_context.wrap_socket(sock, server_hostname=server_hostname)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 455, in wrap_socket
    return self.sslsocket_class._create(
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 1041, in _create
    self.do_handshake()
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 1319, in do_handshake
    self._sslobj.do_handshake()
ssl.SSLCertVerificationError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 787, in urlopen
    response = self._make_request(
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 488, in _make_request
    raise new_e
urllib3.exceptions.SSLError: [SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 667, in send
    resp = conn.urlopen(
           ^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 841, in urlopen
    retries = retries.increment(
              ^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/retry.py", line 519, in increment
    raise MaxRetryError(_pool, url, reason) from reason  # type: ignore[arg-type]
    ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
urllib3.exceptions.MaxRetryError: HTTPSConnectionPool(host='icd.who.int', port=443): Max retries exceeded with url: /browse/latest-release/icf/en (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)')))

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 246, in _iter_versions
    yv = resolve(cls.name)
         ^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 173, in resolve
    return _resolve_helper_cached(name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
    return _calc_entry(core, key, func, args, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
    func_res = func(*args, **kwds)
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 180, in _resolve_helper_cached
    return _resolve_helper(name)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 186, in _resolve_helper
    return getter.resolve()
           ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 224, in resolve
    version=cls.version,
            ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 102, in version
    if isinstance(cls._cache_prop, str):
                  ^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 96, in _cache_prop
    cls._cache = cls().get()
                 ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/icf.py", line 24, in get
    response = requests.get(URL, allow_redirects=True, timeout=15)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/api.py", line 73, in get
    return request("get", url, params=params, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/api.py", line 59, in request
    return session.request(method=method, url=url, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
    resp = self.send(prep, **send_kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 703, in send
    r = adapter.send(request, **kwargs)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 698, in send
    raise SSLError(e, request=request)
requests.exceptions.SSLError: HTTPSConnectionPool(host='icd.who.int', port=443): Max retries exceeded with url: /browse/latest-release/icf/en (Caused by SSLError(SSLCertVerificationError(1, '[SSL: CERTIFICATE_VERIFY_FAILED] certificate verify failed: unable to get local issuer certificate (_ssl.c:1010)')))

Zebrafish Information Network

Using class: ZfinGetter

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 534, in _make_request
    response = conn.getresponse()
               ^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connection.py", line 516, in getresponse
    httplib_response = super().getresponse()
                       ^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/http/client.py", line 1430, in getresponse
    response.begin()
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/http/client.py", line 331, in begin
    version, status, reason = self._read_status()
                              ^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/http/client.py", line 292, in _read_status
    line = str(self.fp.readline(_MAXLINE + 1), "iso-8859-1")
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/socket.py", line 720, in readinto
    return self._sock.recv_into(b)
           ^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 1251, in recv_into
    return self.read(nbytes, buffer)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/opt/hostedtoolcache/Python/3.12.9/x64/lib/python3.12/ssl.py", line 1103, in read
    return self._sslobj.read(len, buffer)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
TimeoutError: The read operation timed out

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 667, in send
    resp = conn.urlopen(
           ^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 841, in urlopen
    retries = retries.increment(
              ^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/retry.py", line 474, in increment
    raise reraise(type(error), error, _stacktrace)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/util/util.py", line 39, in reraise
    raise value
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 787, in urlopen
    response = self._make_request(
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 536, in _make_request
    self._raise_timeout(err=e, url=url, timeout_value=read_timeout)
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/urllib3/connectionpool.py", line 367, in _raise_timeout
    raise ReadTimeoutError(
urllib3.exceptions.ReadTimeoutError: HTTPSConnectionPool(host='zfin.org', port=443): Read timed out. (read timeout=15)

During handling of the above exception, another exception occurred:

Traceback (most recent call last):
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 246, in _iter_versions
    yv = resolve(cls.name)
         ^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 173, in resolve
    return _resolve_helper_cached(name)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 258, in func_wrapper
    return _calc_entry(core, key, func, args, kwds)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/cachier/core.py", line 61, in _calc_entry
    func_res = func(*args, **kwds)
               ^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 180, in _resolve_helper_cached
    return _resolve_helper(name)
           ^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/__init__.py", line 186, in _resolve_helper
    return getter.resolve()
           ^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 224, in resolve
    version=cls.version,
            ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 102, in version
    if isinstance(cls._cache_prop, str):
                  ^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 96, in _cache_prop
    cls._cache = cls().get()
                 ^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/sources/zfin.py", line 23, in get
    soup = get_soup(URL)
           ^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/src/bioversions/utils.py", line 62, in get_soup
    res = requests.get(url, verify=verify, timeout=timeout or 15, headers=headers)
          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/api.py", line 73, in get
    return request("get", url, params=params, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/api.py", line 59, in request
    return session.request(method=method, url=url, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 589, in request
    resp = self.send(prep, **send_kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/sessions.py", line 703, in send
    r = adapter.send(request, **kwargs)
        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/home/runner/work/bioversions/bioversions/.tox/update/lib/python3.12/site-packages/requests/adapters.py", line 713, in send
    raise ReadTimeout(e, request=request)
requests.exceptions.ReadTimeout: HTTPSConnectionPool(host='zfin.org', port=443): Read timed out. (read timeout=15)