This site and accompanying package are a resource for informing you what the latest version of each biological database is. Last updated on 2024-10-07 (revision 804) by runner.
This site also includes Bioschemas annotations, which aims to improve the findability of life sciences resources such as datasets, software, and training materials. These annotations can either appear on the original site, or on a website (like this one) that indexes it or provides additional information. The further information here, for example, is the link to the BioRegistry. The JSON-LD annotation will make it easier for other tools to recognize the content of the table. This includes the Google Dataset finder, besides Bioschemas itself.
Legend: 📥 means the resource reports the date of each release, 📅 means the date of release was inferred based on the date when the latest version was retrieved, 💡 means the date was inferred by the version string.
| Prefix | Name | Version | Date | |
|---|---|---|---|---|
nomen
|
A nomenclatural ontology for biological names | 2019-04-17 | - | 💡 |
agro
|
Agronomy Ontology | 2022-11-02 | - | 💡 |
afo
|
Allotrope Merged Ontology Suite | 2024/06 | - | 💡 |
ado
|
Alzheimer's Disease Ontology | 2023-09-20 | 2023-09-28 | 📅 |
amphx
|
Amphioxus Development and Anatomy Ontology (AMPHX) | 2020-12-18 | - | 💡 |
ecocore
|
An ontology of core ecological entities | 2022-03-09 | - | 💡 |
aeo
|
Anatomical Entity Ontology | 2014-12-05 | - | 💡 |
atol
|
Animal Trait Ontology for Livestock | 2018-09-13 | - | 💡 |
aro
|
Antibiotic Resistance Ontology | 2019-10-24 | - | 💡 |
antibodyregistry
|
Antibody Registry | 3.0 | 2021-10-10 | 📅 |
apollosv
|
Apollo Structured Vocabulary | 2024-08-15 | - | 💡 |
apollo_sv
|
Apollo Structured Vocabulary (Apollo-SV) | 4.1.1 | 2021-02-04 | 📅 |
apo
|
Ascomycete phenotype ontology | 2024-08-03 | - | 💡 |
co_366
|
Bambara groundnut ontology | 2019-12-23 | - | 💡 |
co_325
|
Banana ontology | 2019-10-09 | - | 💡 |
co_323
|
Barley ontology | 2019-11-20 | - | 💡 |
bfo
|
Basic Formal Ontology | 2019-08-26 | - | 💡 |
co_333
|
Beet Ontology ontology | 2019-01-23 | - | 💡 |
bcgo
|
Beta Cell Genomics Ontology | 2015-07-08 | - | 💡 |
| BiGG | 1.6.0 | 2019-10-31 | 📥 | |
bila
|
Bilateria anatomy | 2019-06-12 | - | 💡 |
bao
|
BioAssay Ontology | 2.8.11 | 2024-03-25 | 📅 |
| Biofacquim | 1.0 | 2021-01-03 | 📅 | |
biogrid
|
BioGRID | 4.4.238 | 2024-10-02 | 📅 |
edam
|
Bioinformatics operations, data types, formats, identifiers and topics | 2019-07-17 | - | 💡 |
bco
|
Biological Collections Ontology | 2021-11-14 | - | 💡 |
fbbi
|
Biological Imaging Methods Ontology | 2020-11-06 | - | 💡 |
bspo
|
Biological Spatial Ontology | 2023-05-27 | - | 💡 |
co_345
|
Brachiaria ontology | 2019-10-09 | - | 💡 |
co_348
|
Brassica ontology | 2019-11-29 | - | 💡 |
bto
|
BRENDA tissue / enzyme source | 2021-10-26 | - | 💡 |
bto
|
Brenda Tissue Ontology | 2021-02-09 | - | 💡 |
bto
|
BRENDA Tissue Ontology | 2021-10-26 | - | 💡 |
wbphenotype
|
C elegans Phenotype Ontology | 2021-04-09 | - | 💡 |
wbls
|
C. elegans Development Ontology | 2021-04-09 | - | 💡 |
wbls
|
C. elegans development ontology | 2024-04-09 | - | 💡 |
wbbt
|
C. elegans Gross Anatomy Ontology | 2024-07-01 | - | 💡 |
wbphenotype
|
C. elegans phenotype | 2024-06-05 | - | 💡 |
cvdo
|
Cardiovascular Disease Ontology | 2024-05-17 | - | 💡 |
co_334
|
Cassava ontology | 2019-10-09 | - | 💡 |
co_347
|
Castor bean ontology | 2019-10-09 | - | 💡 |
cco
|
Cell Cycle Ontology | 2016-03-23 | - | 💡 |
clo
|
Cell Line Ontology | 2.1.188 | 2024-08-11 | 📅 |
cl
|
Cell Ontology | 2024-08-16 | - | 💡 |
cl
|
Cell Type Ontology | 2021-03-05 | - | 💡 |
cellosaurus
|
Cellosaurus | 50.0 | 2024-09-10 | 📥 |
cmpo
|
Cellular Microscopy Phenotype Ontology | 2017-12-19 | - | 💡 |
ceph
|
Cephalopod Ontology | 2016-01-12 | - | 💡 |
chebi
|
ChEBI | 236 | 2024-08-02 | 📅 |
chiro
|
ChEBI Integrated Role Ontology | 2015-11-23 | - | 💡 |
chembl
|
ChEMBL | 34 | 2024-03-28 | 📥 |
cao
|
Chemical Analysis Ontology | 0.2 | 2023-05-11 | 📅 |
cheminf
|
Chemical Information Ontology | 2.1.0 | 2023-09-28 | 📅 |
chmo
|
Chemical Methods Ontology | 2022-04-19 | - | 💡 |
chemidplus
|
ChemIDplus | 2023-02-22 | 2023-02-22 | 📥 |
co_338
|
Chickpea ontology | 2019-10-09 | - | 💡 |
cido
|
CIDO: Ontology of Coronavirus Infectious Disease | 1.0.187 | 2021-03-09 | 📅 |
| CiVIC | 01-Oct-2024 | - | 💡 | |
labo
|
clinical LABoratory Ontology | 2021-06-08 | - | 💡 |
cmo
|
Clinical measurement ontology | 2.224 | - | 💡 |
cto
|
Clinical Trials Ontology | 1.0.0 | 2022-01-11 | 📅 |
clo
|
CLO: Cell Line Ontology | 2.1.162 | 2021-02-02 | 📅 |
clyh
|
Clytia hemisphaerica Development and Anatomy Ontology | 2020-05-29 | - | 💡 |
clyh
|
Clytia hemisphaerica Development and Anatomy Ontology (CLYH) | 2020-05-29 | - | 💡 |
colao
|
Coleoptera Anatomy Ontology | 2024-06-21 | - | 💡 |
clao
|
Collembola Anatomy Ontology | 2021-09-27 | - | 💡 |
caro
|
Common Anatomy Reference Ontology | 2023-03-15 | - | 💡 |
co_335
|
Common Bean ontology | 2019-10-09 | - | 💡 |
cdao
|
Comparative Data Analysis Ontology | 2024-01-25 | - | 💡 |
complexportal
|
Complex Portal | 2024-09-08 | 2024-09-08 | 📥 |
cdno
|
Compositional Dietary Nutrition Ontology | 2024-08-13 | - | 💡 |
cio
|
Confidence Information Ontology | 2015-03-10 | - | 💡 |
cro
|
Contributor Role Ontology | 2019-12-11 | - | 💡 |
cob
|
Core Ontology for Biology and Biomedicine | 2023-11-16 | - | 💡 |
cido
|
Coronavirus Infectious Disease Ontology | 2024-02-16 | 2024-03-25 | 📅 |
co_358
|
Cotton ontology | 2020-01-03 | - | 💡 |
covoc
|
CoVoc Coronavirus Vocabulary | 2022-10-26 | - | 💡 |
co_340
|
Cowpea ontology | 2019-10-09 | - | 💡 |
cdno
|
Crop Dietary Nutrition Ontology | 2021-02-06 | - | 💡 |
cryoem
|
Cryo Electron Microscopy ontology | 2021-03-09 | - | 💡 |
cteno
|
Ctenophore Ontology | 2016-10-19 | - | 💡 |
cto
|
CTO: Core Ontology of Clinical Trials | 1.0.0 | 2021-02-04 | 📅 |
duo
|
Data Use Ontology | 2021-02-23 | - | 💡 |
| DepMap | 24Q2 | 2024-06-04 | 📅 | |
dicom
|
DICOM Controlled Terminology | 2024c_20240617 | 2024-06-23 | 📅 |
ddpheno
|
Dicty Phenotype Ontology (DDPHENO) | 2020-06-19 | - | 💡 |
ddanat
|
Dictyostelium discoideum anatomy | 2020-04-13 | - | 💡 |
ddpheno
|
Dictyostelium discoideum phenotype ontology | 2023-08-26 | - | 💡 |
disdriv
|
Disease Drivers Ontology | 2023-12-15 | 2024-03-25 | 📅 |
doid
|
Disease Ontology | 2024-09-27 | 2024-09-27 | 📥 |
| DisGeNet | 7 | 2021-02-01 | 📥 | |
fbbt
|
Drosophila Anatomy Ontology (DAO) | 2021-03-11 | - | 💡 |
fbdv
|
Drosophila development | 2024-08-07 | - | 💡 |
fbbt
|
Drosophila gross anatomy | 2024-08-08 | - | 💡 |
dpo
|
Drosophila Phenotype Ontology | 2024-08-08 | - | 💡 |
dpo
|
Drosophila Phenotype Ontology (DPO) | 2021-03-11 | - | 💡 |
| Drug Gene Interaction Database | 2024-Jun | 2024-06-01 | 📥 | |
dideo
|
Drug-drug Interaction and Drug-drug Interaction Evidence Ontology | 2023-10-16 | - | 💡 |
drugbank
|
DrugBank | 5.1.12 | 2024-03-14 | 📥 |
drugcentral
|
DrugCentral | 54 | 2023-11-01 | 📥 |
ero
|
eagle-i resource ontology | 2016-07-27 | - | 💡 |
ecao
|
Echinoderm Anatomy and Development Ontology | 2020-05-22 | - | 💡 |
edam
|
EDAM Ontology | 17-07-2019 | - | 💡 |
mfoem
|
Emotion Ontology | 2022-07-19 | - | 💡 |
enm
|
eNanoMapper Ontology | 7.4 | 2022-07-20 | 📅 |
enm
|
eNanoMapper ontology | 10.0 | 2023-09-28 | 📅 |
ensembl
|
Ensembl | 112 | 2024-05-01 | 📥 |
ensemblglossary
|
Ensembl Glossary | 2023-01-04 | - | 💡 |
ecto
|
Environment Exposure Ontology | 2021-03-17 | - | 💡 |
envo
|
Environment Ontology | 2024-07-01 | - | 💡 |
eol
|
Environment Ontology for Livestock | 2018-09-13 | - | 💡 |
ecto
|
Environmental conditions, treatments and exposures ontology | 2023-02-14 | - | 💡 |
eco
|
Evidence and Conclusion Ontology | 2024-07-19 | - | 💡 |
eco
|
Evidence Code Ontology | 2021-03-05 | - | 💡 |
eco
|
Evidence ontology | 2023-09-03 | - | 💡 |
eccode
|
ExPASy | 2024-10-02 | - | 💡 |
xco
|
Experimental condition ontology | 4.179 | - | 💡 |
efo
|
Experimental Factor Ontology | 3.69.0 | 2024-08-18 | 📅 |
exo
|
Exposure ontology | 2022-06-29 | - | 💡 |
co_365
|
Fababean ontology | 2019-10-15 | - | 💡 |
srao
|
FAIRsharing Subject Ontology | 2023-10-10 | 2023-11-03 | 📅 |
fypo
|
Fission Yeast Phenotype Ontology | 2024-09-02 | - | 💡 |
flopo
|
Flora Phenotype Ontology | 2019-09-09 | - | 💡 |
fbsp
|
Fly taxonomy | 2017-11-19 | - | 💡 |
flybase
|
FlyBase | 2024_04 | - | 💡 |
fbcv
|
FlyBase Controlled Vocabulary | 2024-08-08 | - | 💡 |
fbcv
|
FlyBase Controlled Vocabulary (FBcv) | 2021-03-11 | - | 💡 |
fbdv
|
FlyBase Developmental Ontology (FBdv) | 2021-03-10 | - | 💡 |
fma
|
FMA | 2020-04-13 | - | 💡 |
fideo
|
Food Interactions with Drugs Evidence Ontology | 2023-12-18 | 2024-03-25 | 📅 |
foodon
|
FoodOn Food Ontology | 2021-03-20 | - | 💡 |
fma
|
Foundational Model of Anatomy | 2020-04-13 | - | 💡 |
fao
|
Fungal gross anatomy | 2020-05-07 | - | 💡 |
fovt
|
FuTRES Ontology of Vertebrate Traits | 2023-05-31 | - | 💡 |
gaz
|
Gazetteer | 2018-06-26 | - | 💡 |
gsso
|
Gender, Sex, and Sexual Orientation Ontology | 2.0.5 | 2021-11-14 | 📅 |
gexo
|
Gene Expression Ontology | 2019-09-18 | - | 💡 |
go
|
Gene Ontology | 2024-09-08 | 2024-09-08 | 📥 |
geno
|
GENO ontology | 2020-03-08 | - | 💡 |
genepio
|
Genomic Epidemiology Ontology | 2023-08-19 | - | 💡 |
gecko
|
Genomics Cohorts Knowledge Ontology | 2021-01-18 | - | 💡 |
geno
|
Genotype Ontology | 2023-10-08 | - | 💡 |
geo
|
GEO | 2016-03-26 | - | 💡 |
geogeo
|
Geographical Entity Ontology | 2016-03-26 | - | 💡 |
gno
|
Glycan Naming and Subsumption Ontology | 2024-05-21 | 2024-05-26 | 📅 |
gno
|
Glycan Naming and Subsumption Ontology (GNOme) | 1.7.2 | 2021-06-25 | 📅 |
gno
|
Glycan Naming Ontology | 1.7.0 | 2021-03-08 | 📅 |
co_337
|
Groundnut ontology | 2019-10-09 | - | 💡 |
| Guide to Pharmacology | 2024.3 | 2024-10-03 | 📥 | |
hso
|
Health Surveillance Ontology | 2021-12-13 | - | 💡 |
hgnc
|
HGNC | 2024-08-23 | - | 💡 |
hpath
|
Histopathology Ontology | 2019-07-05 | - | 💡 |
homologene
|
HomoloGene |
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2024-03-25 | 📅 |
hom
|
Homology Ontology | 2015-01-07 | - | 💡 |
hancestro
|
Human Ancestry Ontology | 2024-08-19 | 2024-09-01 | 📅 |
hcao
|
Human Cell Atlas Ontology | 2022-12-16 | - | 💡 |
ehdaa2
|
Human developmental anatomy, abstract | 2013-07-04 | - | 💡 |
hsapdv
|
Human Developmental Stages | 2020-03-10 | - | 💡 |
hp
|
Human Phenotype Ontology | 2024-08-13 | - | 💡 |
ccf
|
Human Reference Atlas Common Coordinate Framework Ontology | 2.3.0 | 2024-03-25 | 📅 |
xlmod
|
HUPO-PSI cross-linking and derivatization reagents controlled vocabulary | 2019-10-28 | - | 💡 |
hao
|
Hymenoptera Anatomy Ontology | 2023-06-01 | - | 💡 |
htn
|
Hypertension Ontology | 2019-06-10 | - | 💡 |
htn
|
Hypertension Ontology For Clinical Data | 10-06-2019 | - | 💡 |
iceo
|
ICEO: Ontology of Integrative and Conjugative Elements | 2.1 | 2021-02-04 | 📅 |
ido
|
Infectious Disease Ontology | 2017-11-03 | - | 💡 |
iao
|
Information Artifact Ontology | 2022-11-07 | - | 💡 |
ico
|
Informed Consent Ontology | 1.0.187 | 2021-04-14 | 📅 |
ico
|
Informed Consent Ontology (ICO) | 1.0.187 | 2021-04-05 | 📅 |
ino
|
INO: Interaction Network Ontology | 1.0.112 | 2021-02-02 | 📅 |
intact
|
IntAct | 2024-09-08 | 2024-09-08 | 📥 |
iceo
|
Integrative and Conjugative Element Ontology | 2.1 | 2021-04-14 | 📅 |
ino
|
Interaction Network Ontology | 1.1.13 | 2023-03-24 | 📅 |
icd10
|
International Classification of Diseases, 10th Revision | 2019 | 2019-01-01 | 📥 |
icd11
|
International Classification of Diseases, 11th Revision | 2024-01 | 2024-01-01 | 📥 |
icf
|
International Classification of Functioning, Disability and Health | 2024-01 | 2024-01-01 | 📥 |
interpro
|
InterPro | 102.0 | 2024-10-03 | 📥 |
itis
|
ITIS | - | 💡 | |
kegg.pathway
|
KEGG | 112.0 | 2024-10-01 | 📥 |
biomodels.kisao
|
Kinetic Simulation Algorithm Ontology | 2.30 | 2021-10-15 | 📅 |
biomodels.kisao
|
KiSAO | 2.14 | 2021-02-02 | 📅 |
co_339
|
Lentil ontology | 2019-10-09 | - | 💡 |
lepao
|
Lepidoptera Anatomy Ontology | 2023-02-18 | - | 💡 |
lbo
|
Livestock Breed Ontology | 2019-03-26 | - | 💡 |
co_322
|
Maize ontology | 2019-10-09 | - | 💡 |
idomal
|
Malaria Ontology | 2015-03-16 | - | 💡 |
mfmo
|
Mammalian Feeding Muscle Ontology | 2013-11-16 | - | 💡 |
mp
|
Mammalian Phenotype Ontology | 2024-08-08 | - | 💡 |
ms
|
Mass Spectrometry Controlled Vocabulary | 21-11-2019 | - | 💡 |
ms
|
Mass spectrometry ontology | 4.1.173 | - | 💡 |
mamo
|
Mathematical modeling ontology | 2023-02-03 | - | 💡 |
mamo
|
Mathematical Modelling Ontology | 2020-08-24 | - | 💡 |
mmo
|
Measurement method ontology | 2.138 | - | 💡 |
olatdv
|
Medaka Developmental Stages | 2020-03-10 | - | 💡 |
maxo
|
Medical Action Ontology | 2024-07-29 | - | 💡 |
mfomd
|
Mental Disease Ontology | 2020-04-26 | - | 💡 |
mf
|
Mental Functioning Ontology | 2022-07-19 | - | 💡 |
mesh
|
MeSH | 2024 | 2023-12-01 | 📅 |
msio
|
Metabolomics Standards Initiative Ontology | 1.0.1 | 2021-04-14 | 📅 |
msio
|
Metabolomics Standards Initiative Ontology (MSIO) | 1.0.1 | 2021-02-02 | 📅 |
mro
|
MHC Restriction Ontology | 2024-08-02 | - | 💡 |
miapa
|
MIAPA Ontology | 2017-05-09 | - | 💡 |
mco
|
Microbial Conditions Ontology | 2019-05-15 | - | 💡 |
miapa
|
Minimum Anformation About a Phylogenetic Analysis Ontology | 2017-05-09 | - | 💡 |
miapa
|
Minimum Information for A Phylogenetic Analysis (MIAPA) Ontology | 09-05-2017 | - | 💡 |
mpio
|
Minimum PDDI Information Ontology | 2023-10-17 | - | 💡 |
mirbase
|
miRBase | 22.1 | 2023-10-20 | 📅 |
mi
|
Molecular Interactions Controlled Vocabulary | 2020-04-13 | - | 💡 |
mi
|
Molecular Interactions Ontology | 2020-04-13 | - | 💡 |
| Molecular Oncology Almanac | 2024-10-03 | 2024-10-03 | 📥 | |
mop
|
Molecular Process Ontology | 2022-05-11 | - | 💡 |
mondo
|
Monarch Disease Ontology | 2022-12-01 | - | 💡 |
mondo
|
Mondo Disease Ontology | 2024-08-06 | - | 💡 |
mop
|
MOP | 2014-09-03 | - | 💡 |
tgma
|
Mosquito gross anatomy ontology | 2013-06-03 | - | 💡 |
miro
|
Mosquito insecticide resistance | 2014-05-14 | - | 💡 |
ma
|
Mouse Adult Gross Anatomy | 2017-02-07 | - | 💡 |
ma
|
Mouse adult gross anatomy | 2017-02-07 | - | 💡 |
emapa
|
Mouse Developmental Anatomy Ontology | 2023-11-14 | - | 💡 |
mmusdv
|
Mouse Developmental Stages | 2020-03-10 | - | 💡 |
mgi
|
Mouse Genome Database | 6.24 | 2024-07-31 | 📅 |
emap
|
Mouse gross anatomy and development, timed | 2020-04-13 | - | 💡 |
mpath
|
Mouse pathology ontology | 2020-05-19 | - | 💡 |
msigdb
|
MSigDB | 2024.1 | 2024-08-13 | 📅 |
co_346
|
Mungbean ontology | 2019-10-09 | - | 💡 |
rxno
|
Name Reaction Ontology | 2021-12-16 | - | 💡 |
ncit
|
National Cancer Institute Thesaurus | 24.07e | 2024-07-29 | 📥 |
ncbigene
|
NCBI Gene | daily | 2021-01-03 | 📅 |
ncbitaxon
|
NCBI organismal classification | 2021-12-14 | - | 💡 |
ncbitaxon
|
NCBI Taxonomy | 2024-07-03 | - | 💡 |
ncit
|
NCI Thesaurus | 21.05d | 2021-05-28 | 📅 |
nbo
|
Neuro Behavior Ontology | 2023-07-04 | - | 💡 |
ngbo
|
Next Generation Biobanking Ontology | 2022-10-05 | - | 💡 |
nmr
|
NMR-instrument specific component of metabolomics investigations | 1.1.0 | 2021-04-14 | 📅 |
nomen
|
NOMEN - A nomenclatural ontology for biological names | 2019-04-17 | - | 💡 |
ncro
|
Non-Coding RNA Ontology | 2015-12-10 | - | 💡 |
npass
|
NPASS | 2.0 | 2023-03-24 | 📅 |
nmr
|
Nuclear Magnetic Resonance Controlled Vocabulary | 1.1.0 | 2021-02-02 | 📅 |
oae
|
OAE: Ontology of Adverse Events | 1.2.38 | 2021-03-09 | 📅 |
co_350
|
Oat ontology | 2019-10-09 | - | 💡 |
omo
|
OBO Metadata Ontology | 2023-11-02 | - | 💡 |
ontoneo
|
Obstetric and Neonatal Ontology | 2021-04-29 | - | 💡 |
ogg
|
OGG: Ontology of Genes and Genomes | 1.0.59 | 2021-02-04 | 📅 |
ohmi
|
OHMI: Ontology of Host-Microbiome Interactions | 2019-09-17 | - | 💡 |
ohpi
|
OHPI: Ontology of Host-Pathogen Interactions | 02-10-2019 | - | 💡 |
omit
|
OMIT | 07-06-2019 | - | 💡 |
oncotree
|
OncoTree | 2021-11-02 | 2021-11-02 | 📥 |
omim
|
Online Mendelian Inheritance in Man | October 4, 2024 | 2024-10-04 | 📥 |
ontoavida
|
OntoAvida: ontology for Avida digital evolution platform | 2021-09-01 | - | 💡 |
omiabis
|
Ontologized MIABIS | 2014-05-28 | - | 💡 |
ontoavida
|
Ontology for Avida digital evolution platform | 2022-03-15 | - | 💡 |
obib
|
Ontology for Biobanking | 2023-04-05 | - | 💡 |
obib
|
Ontology for BIoBanking (OBIB) | 2021-02-02 | - | 💡 |
obi
|
Ontology for Biomedical Investigations | 2024-06-10 | - | 💡 |
ogms
|
Ontology for General Medical Science | 2021-08-19 | - | 💡 |
ogi
|
Ontology for genetic interval | 2.0 | 2021-02-02 | 📅 |
omit
|
Ontology for MicroRNA Target | dev | - | 💡 |
omrse
|
Ontology for Modeling and Representation of Social Entities | 2024-08-14 | - | 💡 |
ons
|
Ontology for Nutritional Studies | 2024-07-03 | - | 💡 |
opl
|
Ontology for Parasite Lifecycle | 2021-01-28 | - | 💡 |
opl
|
Ontology for Parasite LifeCycle | 2023-08-28 | - | 💡 |
ornaseq
|
Ontology for RNA sequencing (ORNASEQ) | 2019-07-08 | - | 💡 |
aism
|
Ontology for the Anatomy of the Insect SkeletoMuscular system | 2024-06-20 | - | 💡 |
oae
|
Ontology of Adverse Events | 1.2.47 | 2023-05-11 | 📅 |
oarcs
|
Ontology of Arthropod Circulatory Systems | 2019-04-18 | - | 💡 |
obcs
|
Ontology of Biological and Clinical Statistics | 2023-12-08 | 2024-03-25 | 📅 |
oba
|
Ontology of Biological Attributes | 2024-06-27 | - | 💡 |
ogsf
|
Ontology of Genetic Susceptibility Factor | 2.0 | 2021-02-02 | 📅 |
ohpi
|
Ontology of Host Pathogen Interactions | 2019-09-30 | - | 💡 |
ohmi
|
Ontology of Host-Microbiome Interactions | 2019-09-17 | - | 💡 |
omrse
|
Ontology of Medically Related Social Entities | 2023-09-20 | - | 💡 |
omp
|
Ontology of Microbial Phenotypes | 2024-03-25 | - | 💡 |
oostt
|
Ontology of Organizational Structures of Trauma centers and Trauma Systems | 2021-01-11 | - | 💡 |
oostt
|
Ontology of Organizational Structures of Trauma centers and Trauma systems | 2024-01-25 | - | 💡 |
opmi
|
Ontology of Precision Medicine and Investigation | 1.0.166 | 2024-03-25 | 📅 |
micro
|
Ontology of Prokaryotic Phenotypic and Metabolic Characters | 1.5.1 | 2021-02-04 | 📅 |
ornaseq
|
Ontology of RNA Sequencing | 2019-07-08 | - | 💡 |
om
|
Ontology of units of Measure | 2.0.57 | 2024-08-11 | 📅 |
om
|
Ontology of units of Measure (OM) | 2.0.30 | 2021-03-16 | 📅 |
ovae
|
Ontology of Vaccine Adverse Events | 1.0.34 | 2021-04-14 | 📅 |
opmi
|
OPMI: Ontology of Precision Medicine and Investigation | 1.0.118 | 2021-02-04 | 📅 |
ohd
|
Oral Health and Disease Ontology | 2024-06-21 | - | 💡 |
orphanet.ordo
|
Orphanet Rare Disease Ontology | 4.5 | 2024-08-11 | 📅 |
orth
|
Orthology Ontology | 2.0 | 2024-05-19 | 📅 |
ovae
|
OVAE: Ontology of Vaccine Adverse Events | 1.0.34 | 2021-02-04 | 📅 |
pathbank
|
PathBank | 2.0 | 2021-01-02 | 📅 |
phipo
|
Pathogen Host Interaction Phenotype Ontology | 2024-08-29 | - | 💡 |
phipo
|
Pathogen Host Interactions Phenotype Ontology | 2021-03-11 | - | 💡 |
trans
|
Pathogen Transmission Ontology | 2022-10-10 | - | 💡 |
| Pathway Commons | 2023-03-24 | 📅 | ||
pw
|
Pathway Ontology | 23-10-2019 | - | 💡 |
pw
|
Pathway ontology | 7.85 | - | 💡 |
pato
|
PATO | 2020-08-02 | - | 💡 |
co_327
|
Pearl millet ontology | 2019-10-09 | - | 💡 |
psdo
|
Performance Summary Display Ontology | 1.0.1 | 2023-05-11 | 📅 |
pfam
|
Pfam | 37.0 | 2024-03-25 | 📅 |
pato
|
Phenotype And Trait Ontology | 2024-03-28 | - | 💡 |
phi
|
PHI-base Ontology | 2018-12-10 | - | 💡 |
fix
|
Physico-chemical methods and properties | 2020-04-13 | - | 💡 |
rex
|
Physico-chemical process | 2017-11-19 | - | 💡 |
co_341
|
Pigeonpea ontology | 2019-11-18 | - | 💡 |
plana
|
planaria-ontology | 2022-03-02 | - | 💡 |
plana
|
Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology | 2023-03-13 | - | 💡 |
planp
|
Planarian Phenotype Ontology | 2020-03-28 | - | 💡 |
planp
|
Planarian Phenotype Ontology (PLANP) | 2020-03-28 | - | 💡 |
peco
|
Plant Environment Ontology | 2020-08-21 | - | 💡 |
peco
|
Plant Experimental Conditions Ontology | 2023-11-10 | - | 💡 |
po
|
Plant Ontology | 2024-04-17 | - | 💡 |
ppo
|
Plant Phenology Ontology | 2018-10-26 | - | 💡 |
pso
|
Plant Stress Ontology | 2023-11-14 | - | 💡 |
to
|
Plant Trait Ontology | 2023-07-17 | - | 💡 |
pdumdv
|
Platynereis Developmental Stages | 2020-03-10 | - | 💡 |
pombase
|
PomBase | 2024-10-01 | 2024-10-01 | 📥 |
pco
|
Population and Community Ontology | 2021-05-03 | - | 💡 |
poro
|
Porifera (sponge) ontology | 2016-09-13 | - | 💡 |
poro
|
Porifera Ontology | 2016-10-06 | - | 💡 |
co_330
|
Potato ontology | 2019-10-09 | - | 💡 |
pride
|
PRIDE | 05-11-2019 | - | 💡 |
pride
|
PRIDE Controlled Vocabulary | 2.1.2 | - | 💡 |
probonto
|
Probability Distribution Ontology | 2.5.0 | 2021-04-14 | 📅 |
probonto
|
ProbOnto | 2.5.0 | 2021-02-02 | 📅 |
proco
|
Process Chemistry Ontology | 2022-04-11 | 2023-05-11 | 📅 |
mod
|
Protein modification | 1.031.6 | - | 💡 |
mod
|
Protein Modification Ontology | 2020-04-14 | - | 💡 |
pr
|
Protein Ontology | 70.0 | 2024-08-21 | 📅 |
prov
|
PROV Namespace | 2013-04-30 | - | 💡 |
pcl
|
Provisional Cell Ontology | 2024-07-11 | - | 💡 |
| PubChem | 2024-10-01 | - | 💡 | |
rbo
|
Radiation Biology Ontology | 2024-05-31 | - | 💡 |
rgd
|
Rat Genome Database | 2024-09-27 | - | 💡 |
rs
|
Rat Strain Ontology | 6.230 | - | 💡 |
reactome
|
Reactome | 90 | 2024-10-03 | 📅 |
rexo
|
Regulation of Gene Expression Ontology | 2019-04-11 | - | 💡 |
reto
|
Regulation of Transcription Ontology | 2019-09-17 | - | 💡 |
ro
|
Relation Ontology | 2024-04-24 | - | 💡 |
reproduceme
|
REPRODUCE-ME Ontology | 1.1 | 2021-02-02 | 📅 |
rfam
|
Rfam | 15.0 | 2024-09-19 | 📅 |
rhea
|
Rhea | 135 | 2024-10-02 | 📥 |
co_320
|
Rice ontology | 2019-10-09 | - | 💡 |
rnao
|
RNA ontology | 2019-04-15 | - | 💡 |
rxno
|
RXNO | 2021-01-21 | - | 💡 |
rxnorm
|
RxNorm | 2024-09-03 | - | 💡 |
sgd
|
Saccharomyces Genome Database | R64-3-1 | 2021-04-21 | 📥 |
sepio
|
Scientific Evidence and Provenance Information Ontology | 2023-06-13 | 2023-09-28 | 📅 |
sio
|
Semanticscience Integrated Ontology | 1.59 | 2023-05-11 | 📅 |
so
|
Sequence Ontology | 2021-02-16 | - | 💡 |
so
|
Sequence types and features ontology | 2024-06-05 | - | 💡 |
scdo
|
Sickle Cell Disease Ontology | 2021-04-15 | - | 💡 |
snomedct
|
SNOMED CT (International Edition) | 2020-01-31 | - | 💡 |
sibo
|
Social Insect Behavior Ontology | 2015-06-15 | - | 💡 |
swo
|
Software ontology | 2023-03-05 | 2023-05-11 | 📅 |
co_324
|
Sorghum ontology | 2019-10-09 | - | 💡 |
spd
|
Spider Ontology | 1.0 | - | 💡 |
stato
|
STATO: the statistical methods ontology | RC1.4 | 2021-02-02 | 📅 |
| StringDB | 12.0 | 2023-07-26 | 📥 | |
co_360
|
Sugar Kelp trait ontology | 2019-06-26 | - | 💡 |
sdgio
|
Sustainable Development Goals Interface Ontology | 2018-08-10 | - | 💡 |
co_331
|
Sweet Potato ontology | 2019-10-09 | - | 💡 |
swisslipid
|
SwissLipid | 2023-07-02 | - | 💡 |
slm
|
SwissLipids | 2024-06-12 | - | 💡 |
swo
|
SWO (The Software Ontology) | 1.7 | 2021-02-02 | 📅 |
symp
|
Symptom Ontology | 2024-05-17 | - | 💡 |
sbo
|
Systems Biology Ontology | 2021-08-28 | - | 💡 |
taxrank
|
Taxonomic rank vocabulary | 2016-04-15 | - | 💡 |
ncbitaxon
|
Taxonomy | 2021-02-15 | - | 💡 |
biomodels.teddy
|
TEDDY | 2014-04-24 | - | 💡 |
tao
|
Teleost Anatomy Ontology | 2012-08-10 | - | 💡 |
tto
|
Teleost taxonomy ontology | 2018-03-26 | - | 💡 |
biomodels.teddy
|
Terminology for Description of Dynamics | 2014-04-24 | - | 💡 |
t4fs
|
terms4FAIRskills | 2023-03-02 | - | 💡 |
amphx
|
The Amphioxus Development and Anatomy Ontology | 2020-12-18 | - | 💡 |
bcio
|
The Behaviour Change Intervention Ontology | 2024-08-06 | - | 💡 |
idocovid19
|
The COVID-19 Infectious Disease Ontology | 2020-07-21 | - | 💡 |
dron
|
The Drug Ontology | 2024-08-07 | - | 💡 |
ecao
|
The Echinoderm Anatomy and Development Ontology | 2024-08-22 | - | 💡 |
foodon
|
The Food Ontology | 2024-07-12 | - | 💡 |
ogg
|
The Ontology of Genes and Genomes | 1.0.59 | 2021-04-14 | 📅 |
ohd
|
The Oral Health and Disease Ontology | 2016-06-27 | - | 💡 |
pdro
|
The Prescription of Drugs Ontology | 2021-06-08 | - | 💡 |
rnao
|
The RNA Ontology (RNAO): An Ontology for Integrating RNA Sequence and Structure Data | 15-04-2019 | - | 💡 |
stato
|
The Statistical Methods Ontology | 2024-07-07 | 2024-08-11 | 📅 |
vido
|
The Virus Infectious Disease Ontology | 2020-08-25 | - | 💡 |
tads
|
Tick Anatomy Ontology | 2015-08-20 | - | 💡 |
txpo
|
Toxic Process Ontology | 2022-12-07 | - | 💡 |
txpo
|
TOXic Process Ontology (TXPO) | 2020/07/09 | - | 💡 |
uberon
|
Uber Anatomy Ontology | 2024-08-07 | - | 💡 |
uberon
|
UBERON | 2021-02-12 | - | 💡 |
umls
|
UMLS | 2024AA | 2024-05-07 | 📅 |
upheno
|
Unified Phenotype Ontology | 2017-10-31 | - | 💡 |
upheno
|
Unified phenotype ontology (uPheno) | 31-10-2017 | - | 💡 |
unimod
|
Unimod | 21-11-2019 | - | 💡 |
unimod
|
Unimod protein modification database for mass spectrometry | 2019-11-21 | - | 💡 |
upa
|
Unipathway | 2024-03-06 | - | 💡 |
uniprot
|
UniProt | 2024_05 | 2024-05-01 | 📥 |
uo
|
Unit Ontology | 2020-03-10 | - | 💡 |
uo
|
Units of measurement ontology | 2023-05-25 | - | 💡 |
vo
|
Vaccine Ontology | 2024-08-11 | 2024-08-17 | 📅 |
vario
|
Variation Ontology | 2018-11-09 | - | 💡 |
vario
|
VariO | 2018-11-09 | - | 💡 |
vbo
|
Vertebrate Breed Ontology | 2024-08-14 | - | 💡 |
vsao
|
Vertebrate Skeletal Anatomy Ontology | 2012-11-06 | - | 💡 |
vto
|
Vertebrate Taxonomy Ontology | 2020-11-13 | - | 💡 |
vt
|
Vertebrate trait ontology | 2024-08-13 | - | 💡 |
eupath
|
VEuPathDB Ontology | 2021-01-08 | - | 💡 |
eupath
|
VEuPathDB ontology | 2023-05-30 | - | 💡 |
co_356
|
Vitis ontology | 2019-11-29 | - | 💡 |
owl
|
Web Ontology Language | $Date: 2009/11/15 10:54:12 $ | - | 💡 |
co_321
|
Wheat ontology | 2019-10-09 | - | 💡 |
wikipathways
|
WikiPathways | 20240910 | 2024-09-10 | 📥 |
co_357
|
Woody Plant Ontology ontology | 2019-11-18 | - | 💡 |
xao
|
Xenopus Anatomy Ontology | 2024-08-23 | - | 💡 |
xpo
|
Xenopus Phenotype Ontology | 2024-04-18 | - | 💡 |
co_343
|
Yam ontology | 2019-10-09 | - | 💡 |
apo
|
Yeast phenotypes | 2022-03-23 | - | 💡 |
zfa
|
Zebrafish anatomy and development ontology | 2022-12-09 | - | 💡 |
zfs
|
Zebrafish developmental stages ontology | 2020-03-10 | - | 💡 |
zeco
|
Zebrafish Experimental Conditions Ontology | 2022-02-14 | - | 💡 |
zfin
|
Zebrafish Information Network | 2024-10-05 | - | 💡 |
zp
|
Zebrafish Phenotype Ontology | 2024-04-18 | - | 💡 |
Adding More Databases
More databases can be added by sending a pull request to biopragmatics/bioversions by following the contribution guidelines.
Databases are added by the following priority (high to low):
- By request or contribution
- Databases useful for the PyOBO project, aiming to convert all biomedical controlled vocabularies into OBO for general reuse
- Databases useful for the Bio2BEL project, aiming to convert all biological databases into the Biological Expression Language for general reuse and Bio2BEL projects
- Databases appearing in the Bioregistry, OLS, OBO Foundry, or MIRIAM
- Databases tweeted by the International Society of Biocuration (@biocurator)
- Databases I’ve seen during project work
- Serendipity!
Database Updates
The database is automatically updated daily thanks to scheduled workflows in GitHub Actions. The workflow’s configuration can be found here and the last run can be seen here. Further, a changelog can be recapitulated from the commits of the GitHub Actions bot.