This site and accompanying package are a resource for informing you what the latest version of each biological database is. Last updated on 2022-08-16 (revision 385) by runner.

This site also includes Bioschemas annotations, which aims to improve the findability of life sciences resources such as datasets, software, and training materials. These annotations can either appear on the original site, or on a website (like this one) that indexes it or provides additional information. The further information here, for example, is the link to the BioRegistry. The JSON-LD annotation will make it easier for other tools to recognize the content of the table. This includes the Google Dataset finder, besides Bioschemas itself.

Legend: πŸ“₯ means the resource reports the date of each release, πŸ“… means the date of release was inferred based on the date when the latest version was retrieved, πŸ’‘ means the date was inferred by the version string.

Prefix Name Version Date
nomen A nomenclatural ontology for biological names 2019-04-17 -πŸ’‘
agro Agronomy Ontology 2021-11-05 -πŸ’‘
afo Allotrope Merged Ontology Suite 2019-05-10 -πŸ’‘
ado Alzheimer's Disease Ontology 2.0.0 2022-07-31πŸ“…
amphx Amphioxus Development and Anatomy Ontology (AMPHX) 2020-12-18 -πŸ’‘
ecocore An ontology of core ecological entities 2022-03-09 -πŸ’‘
aeo Anatomical Entity Ontology 2014-12-05 -πŸ’‘
atol Animal Trait Ontology for Livestock 2018-09-13 -πŸ’‘
aro Antibiotic Resistance Ontology 2019-10-24 -πŸ’‘
antibodyregistry Antibody Registry 3.0 2021-10-10πŸ“…
apollosv Apollo Structured Vocabulary 4.1.1 2021-04-14πŸ“…
apollo_sv Apollo Structured Vocabulary (Apollo-SV) 4.1.1 2021-02-04πŸ“…
apo Ascomycete phenotype ontology 2022-07-06 -πŸ’‘
co_366 Bambara groundnut ontology 2019-12-23 -πŸ’‘
co_325 Banana ontology 2019-10-09 -πŸ’‘
co_323 Barley ontology 2019-11-20 -πŸ’‘
bfo Basic Formal Ontology 2019-08-26 -πŸ’‘
co_333 Beet Ontology ontology 2019-01-23 -πŸ’‘
BiGG 1.6.0 2019-10-31πŸ“₯
bao BioAssay Ontology 2.7.2 2021-07-30πŸ“…
Biofacquim 1.0 2021-01-03πŸ“…
biogrid BioGRID 4.4.212 2022-08-02πŸ“…
edam Bioinformatics operations, data types, formats, identifiers and topics 2019-07-17 -πŸ’‘
bco Biological Collections Ontology 2021-11-14 -πŸ’‘
fbbi Biological Imaging Methods Ontology 2020-11-06 -πŸ’‘
bspo Biological Spatial Ontology 2022-06-28 -πŸ’‘
co_345 Brachiaria ontology 2019-10-09 -πŸ’‘
co_348 Brassica ontology 2019-11-29 -πŸ’‘
bto BRENDA tissue / enzyme source 2021-10-26 -πŸ’‘
bto Brenda Tissue Ontology 2021-02-09 -πŸ’‘
wbphenotype C elegans Phenotype Ontology 2021-04-09 -πŸ’‘
wbls C. elegans Development Ontology 2021-04-09 -πŸ’‘
wbls C. elegans development ontology 2022-06-21 -πŸ’‘
wbbt C. elegans Gross Anatomy Ontology 2022-06-13 -πŸ’‘
wbphenotype C. elegans phenotype 2022-06-21 -πŸ’‘
cvdo Cardiovascular Disease Ontology 2020-03-05 -πŸ’‘
co_334 Cassava ontology 2019-10-09 -πŸ’‘
co_347 Castor bean ontology 2019-10-09 -πŸ’‘
cco Cell Cycle Ontology 2016-03-23 -πŸ’‘
clo Cell Line Ontology 2.1.178 2022-03-26πŸ“…
cl Cell Ontology 2022-06-18 -πŸ’‘
cl Cell Type Ontology 2021-03-05 -πŸ’‘
cmpo Cellular Microscopy Phenotype Ontology 2017-12-19 -πŸ’‘
ceph Cephalopod Ontology 2016-01-12 -πŸ’‘
chebi ChEBI 212 2022-08-04πŸ“…
chiro ChEBI Integrated Role Ontology 2015-11-23 -πŸ’‘
chembl ChEMBL 30 2022-02-22πŸ“₯
cheminf Chemical Information Ontology 2.0 2021-03-09πŸ“…
chmo Chemical Methods Ontology 2022-04-19 -πŸ’‘
chemidplus ChemIDplus 2022-07-28 2022-07-28πŸ“₯
co_338 Chickpea ontology 2019-10-09 -πŸ’‘
cido CIDO: Ontology of Coronavirus Infectious Disease 1.0.187 2021-03-09πŸ“…
labo clinical LABoratory Ontology 2021-06-08 -πŸ’‘
cmo Clinical measurement ontology 2019-02-19 -πŸ’‘
cto Clinical Trials Ontology 1.0.0 2022-01-11πŸ“…
clo CLO: Cell Line Ontology 2.1.162 2021-02-02πŸ“…
clyh Clytia hemisphaerica Development and Anatomy Ontology 2020-05-29 -πŸ’‘
clyh Clytia hemisphaerica Development and Anatomy Ontology (CLYH) 2020-05-29 -πŸ’‘
colao Coleoptera Anatomy Ontology 2022-06-18 -πŸ’‘
clao Collembola Anatomy Ontology 2021-09-27 -πŸ’‘
caro Common Anatomy Reference Ontology 2022-02-18 -πŸ’‘
co_335 Common Bean ontology 2019-10-09 -πŸ’‘
cdao Comparative Data Analysis Ontology 2019-06-26 -πŸ’‘
complexportal Complex Portal 2022-07-11 2022-07-11πŸ“₯
cdno Compositional Dietary Nutrition Ontology 2022-06-23 -πŸ’‘
cio Confidence Information Ontology 2015-03-10 -πŸ’‘
cro Contributor Role Ontology 2019-12-11 -πŸ’‘
cob Core Ontology for Biology and Biomedicine 2022-05-02 -πŸ’‘
cido Coronavirus Infectious Disease Ontology 1.0.326 2022-05-24πŸ“…
co_358 Cotton ontology 2020-01-03 -πŸ’‘
covoc CoVoc Coronavirus Vocabulary 2020-08-28 -πŸ’‘
co_340 Cowpea ontology 2019-10-09 -πŸ’‘
cdno Crop Dietary Nutrition Ontology 2021-02-06 -πŸ’‘
cryoem Cryo Electron Microscopy ontology 2021-03-09 -πŸ’‘
cteno Ctenophore Ontology 2016-10-19 -πŸ’‘
cto CTO: Core Ontology of Clinical Trials 1.0.0 2021-02-04πŸ“…
duo Data Use Ontology 2021-02-23 -πŸ’‘
DepMap 22Q2 2022-05-10πŸ“…
dicom DICOM Controlled Terminology 2021e_20211122 2021-11-27πŸ“…
ddpheno Dicty Phenotype Ontology (DDPHENO) 2020-06-19 -πŸ’‘
ddanat Dictyostelium discoideum anatomy 2020-04-13 -πŸ’‘
ddpheno Dictyostelium discoideum phenotype ontology 2020-06-19 -πŸ’‘
doid Disease Ontology 2022-07-27 2022-07-27πŸ“₯
DisGeNet 7 2021-02-01πŸ“₯
fbbt Drosophila Anatomy Ontology (DAO) 2021-03-11 -πŸ’‘
fbdv Drosophila development 2022-06-08 -πŸ’‘
fbbt Drosophila gross anatomy 2022-06-09 -πŸ’‘
dpo Drosophila Phenotype Ontology 2022-06-09 -πŸ’‘
dpo Drosophila Phenotype Ontology (DPO) 2021-03-11 -πŸ’‘
Drug Gene Interaction Database 2022-Feb 2022-02-01πŸ“₯
dideo Drug-drug Interaction and Drug-drug Interaction Evidence Ontology 2022-06-14 -πŸ’‘
drugbank DrugBank 5.1.9 2022-01-04πŸ“₯
drugcentral DrugCentral 2021_09_01 2021-09-01πŸ“₯
ero eagle-i resource ontology 2016-07-27 -πŸ’‘
ecao Echinoderm Anatomy and Development Ontology 2020-05-22 -πŸ’‘
edam EDAM Ontology 17-07-2019 -πŸ’‘
mfoem Emotion Ontology 2021-11-17 -πŸ’‘
enm eNanoMapper Ontology 7.4 2022-07-20πŸ“…
ensembl Ensembl 107 2022-07-01πŸ“₯
ensemblglossary Ensembl Glossary 2021-07-14 -πŸ’‘
ecto Environment Exposure Ontology 2021-03-17 -πŸ’‘
envo Environment Ontology 2021-05-14 -πŸ’‘
eol Environment Ontology for Livestock 2018-09-13 -πŸ’‘
ecto Environmental conditions, treatments and exposures ontology 2021-08-25 -πŸ’‘
eco Evidence Code Ontology 2021-03-05 -πŸ’‘
eco Evidence ontology 2022-08-05 -πŸ’‘
eccode ExPASy 03-Aug-2022 2022-08-03πŸ“₯
xco Experimental condition ontology 2019-12-18 -πŸ’‘
efo Experimental Factor Ontology 3.43.0 2022-06-17πŸ“…
exo Exposure ontology 2022-06-29 -πŸ’‘
co_365 Fababean ontology 2019-10-15 -πŸ’‘
srao FAIRsharing Subject Ontology 0.3.0 2021-11-21πŸ“…
fypo Fission Yeast Phenotype Ontology 2022-07-14 -πŸ’‘
flopo Flora Phenotype Ontology 2019-09-09 -πŸ’‘
flybase FlyBase 2022_04 -πŸ’‘
fbcv FlyBase Controlled Vocabulary 2022-06-09 -πŸ’‘
fbcv FlyBase Controlled Vocabulary (FBcv) 2021-03-11 -πŸ’‘
fbdv FlyBase Developmental Ontology (FBdv) 2021-03-10 -πŸ’‘
fma FMA 2020-04-13 -πŸ’‘
foodon FoodOn Food Ontology 2021-03-20 -πŸ’‘
fma Foundational Model of Anatomy 2020-04-13 -πŸ’‘
fao Fungal gross anatomy 2020-05-07 -πŸ’‘
fovt FuTRES Ontology of Vertebrate Traits 2021-11-10 -πŸ’‘
gaz Gazetteer 2018-06-26 -πŸ’‘
gsso Gender, Sex, and Sexual Orientation Ontology 2.0.5 2021-11-14πŸ“…
gexo Gene Expression Ontology 2019-09-18 -πŸ’‘
go Gene Ontology 2022-07-01 2022-07-01πŸ“₯
geno GENO ontology 2020-03-08 -πŸ’‘
genepio Genomic Epidemiology Ontology 2022-02-06 -πŸ’‘
gecko Genomics Cohorts Knowledge Ontology 2021-01-18 -πŸ’‘
geno Genotype Ontology 2022-03-05 -πŸ’‘
geo GEO 2016-03-26 -πŸ’‘
geogeo Geographical Entity Ontology 2016-03-26 -πŸ’‘
gno Glycan Naming and Subsumption Ontology 1.10.0 2022-03-03πŸ“…
gno Glycan Naming and Subsumption Ontology (GNOme) 1.7.2 2021-06-25πŸ“…
gno Glycan Naming Ontology 1.7.0 2021-03-08πŸ“…
co_337 Groundnut ontology 2019-10-09 -πŸ’‘
Guide to Pharmacology 2022.2 2022-06-09πŸ“₯
hso Health Surveillance Ontology 2021-12-13 -πŸ’‘
hgnc HGNC 2022-08-01 -πŸ’‘
hpath Histopathology Ontology 2019-07-05 -πŸ’‘
homologene HomoloGene 68 2021-03-02πŸ“…
hom Homology Ontology 2015-01-07 -πŸ’‘
hancestro Human Ancestry Ontology 2.6 2022-06-17πŸ“…
hcao Human Cell Atlas Ontology 2022-06-22 -πŸ’‘
ehdaa2 Human developmental anatomy, abstract 2013-07-04 -πŸ’‘
hsapdv Human Developmental Stages 2020-03-10 -πŸ’‘
hp Human Phenotype Ontology 2022-06-11 -πŸ’‘
xlmod HUPO-PSI cross-linking and derivatization reagents controlled vocabulary 2019-10-28 -πŸ’‘
hao Hymenoptera Anatomy Ontology 2021-03-05 -πŸ’‘
htn Hypertension Ontology 2019-06-10 -πŸ’‘
htn Hypertension Ontology For Clinical Data 10-06-2019 -πŸ’‘
iceo ICEO: Ontology of Integrative and Conjugative Elements 2.1 2021-02-04πŸ“…
ido Infectious Disease Ontology 2017-11-03 -πŸ’‘
iao Information Artifact Ontology 2020-12-09 -πŸ’‘
ico Informed Consent Ontology 1.0.187 2021-04-14πŸ“…
ico Informed Consent Ontology (ICO) 1.0.187 2021-04-05πŸ“…
ino INO: Interaction Network Ontology 1.0.112 2021-02-02πŸ“…
intact IntAct 2022-07-11 2022-07-11πŸ“₯
iceo Integrative and Conjugative Element Ontology 2.1 2021-04-14πŸ“…
ino Interaction Network Ontology 1.0.112 2021-04-14πŸ“…
interpro InterPro 90.0 2022-05-26πŸ“₯
itis ITIS 01-Aug-2022 -πŸ’‘
kegg.pathway KEGG 103.0 2022-07-01πŸ“₯
biomodels.kisao Kinetic Simulation Algorithm Ontology 2.30 2021-10-15πŸ“…
biomodels.kisao KiSAO 2.14 2021-02-02πŸ“…
co_339 Lentil ontology 2019-10-09 -πŸ’‘
lepao Lepidoptera Anatomy Ontology 2021-11-20 -πŸ’‘
lbo Livestock Breed Ontology 2019-03-26 -πŸ’‘
co_322 Maize ontology 2019-10-09 -πŸ’‘
idomal Malaria Ontology 2015-03-16 -πŸ’‘
mfmo Mammalian Feeding Muscle Ontology 2013-11-16 -πŸ’‘
mp Mammalian Phenotype Ontology 2019-11-11 -πŸ’‘
ms Mass Spectrometry Controlled Vocabulary 21-11-2019 -πŸ’‘
ms Mass spectrometry ontology 2019-11-21 -πŸ’‘
mamo Mathematical modeling ontology 2020-08-24 -πŸ’‘
mamo Mathematical Modelling Ontology 2020-08-24 -πŸ’‘
mmo Measurement method ontology 2019-03-27 -πŸ’‘
olatdv Medaka Developmental Stages 2020-03-10 -πŸ’‘
maxo Medical Action Ontology 2022-06-23 -πŸ’‘
mfomd Mental Disease Ontology 2020-04-26 -πŸ’‘
mf Mental Functioning Ontology 2021-11-17 -πŸ’‘
mesh MeSH 2022 2021-12-07πŸ“…
msio Metabolomics Standards Initiative Ontology 1.0.1 2021-04-14πŸ“…
msio Metabolomics Standards Initiative Ontology (MSIO) 1.0.1 2021-02-02πŸ“…
mro MHC Restriction Ontology 2022-06-17 -πŸ’‘
miapa MIAPA Ontology 2017-05-09 -πŸ’‘
mco Microbial Conditions Ontology 2019-05-15 -πŸ’‘
miapa Minimum Anformation About a Phylogenetic Analysis Ontology 2017-05-09 -πŸ’‘
miapa Minimum Information for A Phylogenetic Analysis (MIAPA) Ontology 09-05-2017 -πŸ’‘
mpio Minimum PDDI Information Ontology 2019-01-30 -πŸ’‘
mirbase miRBase 22.1 2020-12-22πŸ“…
mi Molecular Interactions Controlled Vocabulary 2020-04-13 -πŸ’‘
mi Molecular Interactions Ontology 2020-04-13 -πŸ’‘
Molecular Oncology Almanac 2022-07-07 2022-07-07πŸ“₯
mop Molecular Process Ontology 2022-02-01 -πŸ’‘
mondo Monarch Disease Ontology 2022-07-01 -πŸ’‘
mondo Mondo Disease Ontology 2021-04-07 -πŸ’‘
mop MOP 2014-09-03 -πŸ’‘
tgma Mosquito gross anatomy ontology 2013-06-03 -πŸ’‘
miro Mosquito insecticide resistance 2014-05-14 -πŸ’‘
ma Mouse Adult Gross Anatomy 2017-02-07 -πŸ’‘
ma Mouse adult gross anatomy 2017-02-07 -πŸ’‘
emapa Mouse Developmental Anatomy Ontology 2022-07-14 -πŸ’‘
mmusdv Mouse Developmental Stages 2020-03-10 -πŸ’‘
mpath Mouse pathology ontology 2020-05-19 -πŸ’‘
msigdb MSigDB 7.5.1 2022-01-01πŸ“₯
co_346 Mungbean ontology 2019-10-09 -πŸ’‘
rxno Name Reaction Ontology 2021-12-16 -πŸ’‘
ncit National Cancer Institute Thesaurus 22.07d 2022-07-25πŸ“₯
ncbigene NCBI Gene daily 2021-01-03πŸ“…
ncbitaxon NCBI organismal classification 2021-12-14 -πŸ’‘
ncbitaxon NCBI Taxonomy 2022-06-28 -πŸ’‘
ncit NCI Thesaurus 21.05d 2021-05-28πŸ“…
nbo Neuro Behavior Ontology 2021-02-15 -πŸ’‘
nmr NMR-instrument specific component of metabolomics investigations 1.1.0 2021-04-14πŸ“…
nomen NOMEN - A nomenclatural ontology for biological names 2019-04-17 -πŸ’‘
ncro Non-Coding RNA Ontology 2015-12-10 -πŸ’‘
npass NPASS 1.0 2021-01-03πŸ“…
nmr Nuclear Magnetic Resonance Controlled Vocabulary 1.1.0 2021-02-02πŸ“…
oae OAE: Ontology of Adverse Events 1.2.38 2021-03-09πŸ“…
co_350 Oat ontology 2019-10-09 -πŸ’‘
omo OBO Metadata Ontology 2022-04-27 -πŸ’‘
ontoneo Obstetric and Neonatal Ontology v1.6 -πŸ’‘
ogg OGG: Ontology of Genes and Genomes 1.0.59 2021-02-04πŸ“…
ohmi OHMI: Ontology of Host-Microbiome Interactions 2019-09-17 -πŸ’‘
ohpi OHPI: Ontology of Host-Pathogen Interactions 02-10-2019 -πŸ’‘
omit OMIT 07-06-2019 -πŸ’‘
oncotree OncoTree 2021-11-02 2021-11-02πŸ“₯
ontoavida OntoAvida: ontology for Avida digital evolution platform 2021-09-01 -πŸ’‘
omiabis Ontologized MIABIS 2014-05-28 -πŸ’‘
ontoavida Ontology for Avida digital evolution platform 2022-03-15 -πŸ’‘
obib Ontology for Biobanking 2021-11-12 -πŸ’‘
obib Ontology for BIoBanking (OBIB) 2021-02-02 -πŸ’‘
obi Ontology for Biomedical Investigations 2022-07-11 -πŸ’‘
ogms Ontology for General Medical Science 2021-08-19 -πŸ’‘
ogi Ontology for genetic interval 2.0 2021-02-02πŸ“…
omit Ontology for MicroRNA Target 2019-06-07 -πŸ’‘
ons Ontology for Nutritional Studies Release version 1.2.3 -πŸ’‘
opl Ontology for Parasite Lifecycle 2021-01-28 -πŸ’‘
opl Ontology for Parasite LifeCycle 2021-01-28 -πŸ’‘
ornaseq Ontology for RNA sequencing (ORNASEQ) 2019-07-08 -πŸ’‘
aism Ontology for the Anatomy of the Insect SkeletoMuscular system 2022-06-27 -πŸ’‘
oae Ontology of Adverse Events 1.2.44 2021-09-15πŸ“…
oarcs Ontology of Arthropod Circulatory Systems 2019-04-18 -πŸ’‘
obcs Ontology of Biological and Clinical Statistics 101 2021-02-02πŸ“…
oba Ontology of Biological Attributes 2022-08-03 -πŸ’‘
ogsf Ontology of Genetic Susceptibility Factor 2.0 2021-02-02πŸ“…
ohpi Ontology of Host Pathogen Interactions 2019-10-02 -πŸ’‘
ohmi Ontology of Host-Microbiome Interactions 2019-09-17 -πŸ’‘
omrse Ontology of Medically Related Social Entities 2022-04-06 -πŸ’‘
omp Ontology of Microbial Phenotypes 2022-08-05 -πŸ’‘
oostt Ontology of Organizational Structures of Trauma centers and Trauma Systems 2021-01-11 -πŸ’‘
oostt Ontology of Organizational Structures of Trauma centers and Trauma systems 2021-01-11 -πŸ’‘
opmi Ontology of Precision Medicine and Investigation 1.0.158 2022-06-22πŸ“…
micro Ontology of Prokaryotic Phenotypic and Metabolic Characters 1.5.1 2021-02-04πŸ“…
ornaseq Ontology of RNA Sequencing 2019-07-08 -πŸ’‘
om Ontology of units of Measure 2.0.38 2022-08-13πŸ“…
om Ontology of units of Measure (OM) 2.0.30 2021-03-16πŸ“…
ovae Ontology of Vaccine Adverse Events 1.0.34 2021-04-14πŸ“…
opmi OPMI: Ontology of Precision Medicine and Investigation 1.0.118 2021-02-04πŸ“…
ohd Oral Health and Disease Ontology 2016-06-27 -πŸ’‘
orphanet.ordo Orphanet Rare Disease Ontology 4.1 2022-07-01πŸ“…
orth Orthology Ontology This ontology is the second version of the orthology ontology first published in 2015 and available at http://purl.bioontology.org/ontology/ORTH . @authors T.M. de Farias, H. Chiba, J.T. Fernandez-Breis, E. Antezana, D. Kuznetsov, C. Dessimoz and F. Villiers. 2021-03-29πŸ“…
ovae OVAE: Ontology of Vaccine Adverse Events 1.0.34 2021-02-04πŸ“…
pathbank PathBank 2.0 2021-01-02πŸ“…
phipo Pathogen Host Interaction Phenotype Ontology 2021-07-14 -πŸ’‘
phipo Pathogen Host Interactions Phenotype Ontology 2021-03-11 -πŸ’‘
trans Pathogen Transmission Ontology 2020-08-04 -πŸ’‘
Pathway Commons 12 2021-11-18πŸ“…
pw Pathway Ontology 23-10-2019 -πŸ’‘
pw Pathway ontology 2019-10-23 -πŸ’‘
pato PATO 2020-08-02 -πŸ’‘
co_327 Pearl millet ontology 2019-10-09 -πŸ’‘
psdo Performance Summary Display Ontology 1.0.0 2021-02-02πŸ“…
pfam Pfam 35.0 2021-11-11πŸ“…
pato Phenotype And Trait Ontology 2022-07-21 -πŸ’‘
phi PHI-base Ontology 2018-12-10 -πŸ’‘
fix Physico-chemical methods and properties 2020-04-13 -πŸ’‘
rex Physico-chemical process 2017-11-19 -πŸ’‘
co_341 Pigeonpea ontology 2019-11-18 -πŸ’‘
plana planaria-ontology 2022-03-02 -πŸ’‘
plana Planarian Anatomy and Schmidtea mediterranean Developmental Stage Ontology 2022-03-02 -πŸ’‘
planp Planarian Phenotype Ontology 2020-03-28 -πŸ’‘
planp Planarian Phenotype Ontology (PLANP) 2020-03-28 -πŸ’‘
peco Plant Environment Ontology 2020-08-21 -πŸ’‘
peco Plant Experimental Conditions Ontology 2020-08-21 -πŸ’‘
po Plant Ontology 2021-08-13 -πŸ’‘
ppo Plant Phenology Ontology 2018-10-26 -πŸ’‘
pso Plant Stress Ontology 2020-05-19 -πŸ’‘
to Plant Trait Ontology 2022-04-13 -πŸ’‘
pdumdv Platynereis Developmental Stages 2020-03-10 -πŸ’‘
pombase PomBase 2022-08-01 2022-08-01πŸ“₯
pco Population and Community Ontology 2021-05-03 -πŸ’‘
poro Porifera (sponge) ontology 2016-09-13 -πŸ’‘
poro Porifera Ontology 2016-10-06 -πŸ’‘
co_330 Potato ontology 2019-10-09 -πŸ’‘
pride PRIDE 05-11-2019 -πŸ’‘
probonto Probability Distribution Ontology 2.5.0 2021-04-14πŸ“…
probonto ProbOnto 2.5.0 2021-02-02πŸ“…
proco Process Chemistry Ontology PROCO release 20220414 2022-07-31πŸ“…
mod Protein modification 2020-04-14 -πŸ’‘
mod Protein Modification Ontology 2020-04-14 -πŸ’‘
pr Protein Ontology 67.0 2022-08-13πŸ“…
prov PROV Namespace 2013-04-30 -πŸ’‘
pcl Provisional Cell Ontology 2022-04-27 -πŸ’‘
PubChem 2022-08-01 -πŸ’‘
rbo Radiation Biology Ontology 2022-06-02 -πŸ’‘
RGD Rat Genome Database 2022-08-12 -πŸ’‘
rs Rat Strain Ontology 2019-12-13 -πŸ’‘
reactome Reactome 81 2022-06-17πŸ“…
rexo Regulation of Gene Expression Ontology 2019-04-11 -πŸ’‘
reto Regulation of Transcription Ontology 2019-09-17 -πŸ’‘
ro Relation Ontology 2022-05-23 -πŸ’‘
reproduceme REPRODUCE-ME Ontology 1.1 2021-02-02πŸ“…
rfam Rfam 14.8 2022-05-27πŸ“…
rhea Rhea 123 2022-08-03πŸ“₯
co_320 Rice ontology 2019-10-09 -πŸ’‘
rnao RNA ontology 2019-04-15 -πŸ’‘
rxno RXNO 2021-01-21 -πŸ’‘
rxnorm RxNorm 2022-08-01 -πŸ’‘
sgd Saccharomyces Genome Database R64-3-1 2021-04-21πŸ“₯
sepio Scientific Evidence and Provenance Information Ontology $Revision$ 2021-02-02πŸ“…
sio Semanticscience Integrated Ontology 1.53 2021-07-27πŸ“…
so Sequence Ontology 2021-02-16 -πŸ’‘
so Sequence types and features ontology 2021-11-22 -πŸ’‘
scdo Sickle Cell Disease Ontology 2021-04-15 -πŸ’‘
snomedct SNOMED CT (International Edition) 2020-01-31 -πŸ’‘
sibo Social Insect Behavior Ontology 2015-06-15 -πŸ’‘
swo Software ontology 1.7 2021-04-14πŸ“…
co_324 Sorghum ontology 2019-10-09 -πŸ’‘
spd Spider Ontology 2019-02-27 -πŸ’‘
stato STATO: the statistical methods ontology RC1.4 2021-02-02πŸ“…
StringDB 11.5 2021-08-12πŸ“₯
co_360 Sugar Kelp trait ontology 2019-06-26 -πŸ’‘
sdgio Sustainable Development Goals Interface Ontology 2018-08-10 -πŸ’‘
co_331 Sweet Potato ontology 2019-10-09 -πŸ’‘
swisslipid SwissLipid 2022-08-16 -πŸ’‘
swo SWO (The Software Ontology) 1.7 2021-02-02πŸ“…
symp Symptom Ontology 2022-07-12 -πŸ’‘
sbo Systems Biology Ontology 2021-08-28 -πŸ’‘
taxrank Taxonomic rank vocabulary 2016-04-15 -πŸ’‘
ncbitaxon Taxonomy 2021-02-15 -πŸ’‘
biomodels.teddy TEDDY 2014-04-24 -πŸ’‘
tto Teleost taxonomy ontology 2018-03-26 -πŸ’‘
biomodels.teddy Terminology for Description of Dynamics 2014-04-24 -πŸ’‘
amphx The Amphioxus Development and Anatomy Ontology 2020-12-18 -πŸ’‘
bcio The Behaviour Change Intervention Ontology 2020-12-15 -πŸ’‘
idocovid19 The COVID-19 Infectious Disease Ontology 2020-07-21 -πŸ’‘
dron The Drug Ontology 2022-04-22 -πŸ’‘
ecao The Echinoderm Anatomy and Development Ontology 2020-05-22 -πŸ’‘
foodon The Food Ontology 2022-02-01 -πŸ’‘
ogg The Ontology of Genes and Genomes 1.0.59 2021-04-14πŸ“…
ohd The Oral Health and Disease Ontology 2016-06-27 -πŸ’‘
pdro The Prescription of Drugs Ontology 2021-06-08 -πŸ’‘
rnao The RNA Ontology (RNAO): An Ontology for Integrating RNA Sequence and Structure Data 15-04-2019 -πŸ’‘
stato The Statistical Methods Ontology 1.4 2022-03-04πŸ“…
vido The Virus Infectious Disease Ontology 2020-08-25 -πŸ’‘
tads Tick Anatomy Ontology 2015-08-20 -πŸ’‘
txpo Toxic Process Ontology 2020-07-09 -πŸ’‘
txpo TOXic Process Ontology (TXPO) 2020/07/09 -πŸ’‘
uberon Uber Anatomy Ontology 2022-06-30 -πŸ’‘
uberon UBERON 2021-02-12 -πŸ’‘
umls UMLS 2022AA 2022-05-03πŸ“…
upheno Unified Phenotype Ontology 2017-10-31 -πŸ’‘
upheno Unified phenotype ontology (uPheno) 31-10-2017 -πŸ’‘
unimod Unimod 21-11-2019 -πŸ’‘
unimod Unimod protein modification database for mass spectrometry 2019-11-21 -πŸ’‘
upa Unipathway 2018-12-12 -πŸ’‘
uniprot UniProt 2022_03 2022-03-01πŸ“₯
uo Unit Ontology 2020-03-10 -πŸ’‘
uo Units of measurement ontology 2020-03-10 -πŸ’‘
vo Vaccine Ontology 1.1.198 2022-07-01πŸ“…
vario Variation Ontology 2018-11-09 -πŸ’‘
vario VariO 2018-11-09 -πŸ’‘
vto Vertebrate Taxonomy Ontology 2020-11-13 -πŸ’‘
vt Vertebrate trait ontology 2019-06-07 -πŸ’‘
eupath VEuPathDB Ontology 2021-01-08 -πŸ’‘
eupath VEuPathDB ontology 2022-06-08 -πŸ’‘
co_356 Vitis ontology 2019-11-29 -πŸ’‘
co_321 Wheat ontology 2019-10-09 -πŸ’‘
wikipathways WikiPathways 20220810 2022-08-10πŸ“₯
co_357 Woody Plant Ontology ontology 2019-11-18 -πŸ’‘
xao Xenopus Anatomy Ontology 2021-03-04 -πŸ’‘
xpo Xenopus Phenotype Ontology 2021-03-05 -πŸ’‘
co_343 Yam ontology 2019-10-09 -πŸ’‘
apo Yeast phenotypes 2022-03-23 -πŸ’‘
zfa Zebrafish anatomy and development ontology 2022-03-15 -πŸ’‘
zfs Zebrafish developmental stages ontology 2020-03-10 -πŸ’‘
zeco Zebrafish Experimental Conditions Ontology 2022-02-14 -πŸ’‘
zfin Zebrafish Information Network 14 Aug 2022 2022-08-14πŸ“₯
zp Zebrafish Phenotype Ontology 2021-12-12 -πŸ’‘

Adding More Databases

More databases can be added by sending a pull request to biopragmatics/bioversions by following the contribution guidelines.

Databases are added by the following priority (high to low):

  1. By request or contribution
  2. Databases useful for the PyOBO project, aiming to convert all biomedical controlled vocabularies into OBO for general reuse
  3. Databases useful for the Bio2BEL project, aiming to convert all biological databases into the Biological Expression Language for general reuse and Bio2BEL projects
  4. Databases appearing in the Bioregistry, OLS, OBO Foundry, or MIRIAM
  5. Databases tweeted by the International Society of Biocuration (@biocurator)
  6. Databases I’ve seen during project work
  7. Serendipity!

Database Updates

The database is automatically updated daily thanks to scheduled workflows in GitHub Actions. The workflow’s configuration can be found here and the last run can be seen here. Further, a changelog can be recapitulated from the commits of the GitHub Actions bot.