The covid-19 epidemiology and monitoring ontology (cemo) provides a common ontological model to make epidemiological quantitative data for monitoring the covid-19 outbreak machine-readable and interoperable to facilitate its exchange, integration and analysis, to eventually support evidence-based rapid response.
bioregistry:cemo
| Type | Local Identifier | Name |
|---|---|---|
| Term | attack_rate | attack rate |
| Term | average_daily_number_of_new_infections_generated_per_case_rt | average daily number of new infections generated per case (rt) |
| Term | average_rate_of_infectious_contacts | average rate of infectious contacts |
| Term | case_fatality_rate | case fatality rate |
| Term | cases_by_exposure_in_a_healthcare_setting | cases by exposure in a healthcare setting |
| Term | caused_by | caused by |
| Term | cluster_size | cluster size |
| Term | complication_rate | complication rate |
| Term | critical_vaccination_coverage | critical vaccination coverage |
| Term | cumulative_case_rates | cumulative case rates |
| Term | cumulative_cases | cumulative cases |
| Term | cumulative_death_rates | cumulative death rates |
| Term | cumulative_excess_mortality | cumulative excess mortality |
| Term | daily_cases | daily cases |
| Term | daily_deaths | daily deaths |
| Term | descriptive_epidemiology | descriptive epidemiology |
| Term | device-specific_rates_and_procedure-specific_rates | device-specific rates and procedure-specific rates |
| Term | distribution | distribution |
| Term | duration_of_infection | duration of infection |
| Term | effective_reproduction_number | effective reproduction number |
| Term | environmental_risk_factor | environmental risk factor |
| Term | epidemic_doubling_time | epidemic doubling time |
| Term | epidemiological_core_concepts | epidemiological core concepts |
| Term | etiology | etiology |
| Term | exposed_contacts | exposed contacts |
| Term | exposed_individuals | exposed individuals |
| Term | exposition_interval | exposition interval |
| Term | exposure | exposure |
| Term | generation_interval | generation interval |
| Term | growth_rate | growth rate |
| Term | herd_immunity_threshold | herd immunity threshold |
| Term | hospital-wide_nosocomial_infection_rate_per_100_admissions | hospital-wide nosocomial infection rate per 100 admissions |
| Term | hospital-wide_patient_infection_rate_per_100_admissions | hospital-wide patient infection rate per 100 admissions |
| Term | hospitalization_rate | hospitalization rate |
| Term | host_risk_factor | host risk factor |
| Term | incidence_of_sever_outcomes | incidence of sever outcomes |
| Term | infection_fatality_rate | infection fatality rate |
| Term | infectious_process | infectious process |
| Term | initial_exposed_case | initial exposed case |
| Term | initial_infection_case | initial infection case |
| Term | interpretation | interpretation |
| Term | length_of_intensive_care_unit_stay | length of icu stay |
| Term | line_of_infection | line of infection |
| Term | male-to-female_ratio | male-to-female ratio |
| Term | median_age_of_cases | median age of cases |
| Term | median_age_of_cases_died | median age of cases died |
| Term | median_age_of_cases_hospitalized | median age of cases hospitalized |
| Term | new_daily_case_rates | new daily case rates |
| Term | new_daily_cases | new daily cases |
| Term | new_daily_death_rates | new daily death rates |
| Term | non-pharmaceutical_interventions | non-pharmaceutical interventions |
| Term | number_of_active_cases | number of active cases |
| Term | number_of_cases_by_testing | number of cases by testing |
| Term | number_of_cases_currently_in_hospital | number of cases currently in hospital |
| Term | number_of_cases_currently_in_icu | number of cases currently in icu |
| Term | number_of_cases_exposed_by_international_travel | number of cases exposed by international travel |
| Term | number_of_cases_exposed_by_local_one_or_cluster_case | number of cases exposed by local (one or cluster) case |
| Term | number_of_cases_exposed_by_local_unknown_exposure | number of cases exposed by local unknown exposure |
| Term | number_of_cases_hospitalized_this_week | number of cases hospitalized this week |
| Term | number_of_cases_removed_from_isolation_this_week | number of cases removed from isolation this week |
| Term | number_of_cases_with_exposure_events | number of cases with exposure events |
| Term | number_of_cases_with_mild_symptoms | number of cases with mild symptoms |
| Term | number_of_cases_with_missing_exposure_information | number of cases with missing exposure information |
| Term | number_of_cases_with_no_symptoms | number of cases with no symptoms |
| Term | number_of_cases_with_school_exposure_events | number of cases with school exposure events |
| Term | number_of_deaths_new_this_week | number of deaths new this week |
| Term | number_of_schools_with_exposure_events | number of schools with exposure events |
| Term | number_of_tested_specimens | number of tested specimens |
| Term | number_of_tests | number of tests |
| Term | odds_ratio_for_being_an_infected_contact | odds ratio for being an infected contact |
| Term | onset_of_symptom_to_hospitalization | onset of symptom to hospitalization |
| Term | opportunity | opportunity |
| Term | other_indicators | other indicators |
| Term | per_capita_mobility | per capita mobility |
| Term | percent_daily_change | percent daily change |
| Term | percent_increase_in_mortality | percent increase in mortality |
| Term | percentage_cases_died | percentage cases died |
| Term | percentage_cases_female_sex | percentage cases female sex |
| Term | percentage_cases_removed | percentage cases removed |
| Term | percentage_of_asymptomatic_of_confirmed_cases | percentage of asymptomatic of confirmed cases |
| Term | percentage_of_cases | percentage of cases |
| Term | percentage_of_cases_icu | percentage of cases icu |
| Term | percentage_of_cases_which_are_detected | percentage of cases which are detected |
| Term | percentage_of_laboratory_findings | percentage of laboratory findings |
| Term | period_from_infectious_to_confirmed | period from infectious to confirmed |
| Term | points_of_interest | points of interest (pois) |
| Term | positive_contacts | positive contacts |
| Term | predictive_value_positive | predictive value positive (pvp) |
| Term | prevalence_of_comorbidities_cases | prevalence of comorbidities cases |
| Term | prevalence_of_sars-cov-2_seropositivity | prevalence of sars-cov-2 seropositivity |
| Term | proportion_of_cases_attributed_to_travel | proportion of cases attributed to travel |
| Term | protection_rate | protection rate |
| Term | quantitative_parameters | quantitative quality |
| Term | quarantined_cases | quarantined cases |
| Term | rate_cases_by_testing | rate cases by testing |
| Term | rate_of_cases_with_at_least_one_comorbidity | rate of cases with at least one comorbidity |
| Term | rate_of_community_transmission | rate of community transmission |
| Term | rate_of_infectious_contacts | rate of infectious contacts |
| Term | relative_change_in_new_infections | relative change in new infections |
| Term | reproductive_rate | reproductive rate |
| Term | risk_factor | risk factor |
| Term | secondary_attack_rate | secondary attack rate |
| Term | serial_interval | serial interval |
| Term | susceptible_individuals | susceptible individuals |
| Term | suspected_cases | suspected cases |
| Term | testing_rate | testing rate |
| Term | total_number_of_cases_ever_hospitalized | total number of cases ever hospitalized |
| Term | total_number_of_cases_removed_from_isolation | total number of cases removed from isolation |
| Term | undetected_cases | undetected cases |
| Term | untraceable_contacts | untraceable contacts |
| Term | weighted_prevalence | weighted prevalence |