oquat

xco

This document details the invalid local unique identifiers used in CURIEs for node, synonym, and definition cross-references in xco. See the GitHub repository.

Cellosaurus: Cellosaurus

Overall, there were 2 invalid xrefs to external prefixed with Cellosaurus (standardized to Bioregistry prefix cellosaurus) that did not match the standard pattern ^[A-Z0-9]{4}$.

external_xref usages_count usages
Cellosaurus:CVCL_5712 1 XCO:0000835
Cellosaurus:CVCL_3537 1 XCO:0001045

CHEBI: Chemical Entities of Biological Interest

Overall, there were 1 invalid xrefs to external prefixed with CHEBI (standardized to Bioregistry prefix chebi) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
CHEBI:25698he 1 XCO:0000799

CHEMBL: ChEMBL

Overall, there were 1 invalid xrefs to external prefixed with CHEMBL (standardized to Bioregistry prefix chembl) that did not match the standard pattern ^CHEMBL\d+$.

external_xref usages_count usages
CHEMBL:105608 1 XCO:0000322

MESH: Medical Subject Headings

Overall, there were 2 invalid xrefs to external prefixed with MESH (standardized to Bioregistry prefix mesh) that did not match the standard pattern ^(C|D|M)\d{6,9}$.

external_xref usages_count usages
MESH:68011802 2 XCO:0000617, XCO:0000617

PMID: PubMed

Overall, there were 3 invalid xrefs to external prefixed with PMID (standardized to Bioregistry prefix pubmed) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
PMID:_21543068 1 XCO:0001532
PMID:_33008419 1 XCO:0001535
PMID:_28143577 1 XCO:0001576

RGD: Rat Genome Database

Overall, there were 41 invalid xrefs to external prefixed with RGD (standardized to Bioregistry prefix rgd) that did not match the standard pattern ^\d{4,}$.

external_xref usages_count usages
RGD:MS 24 XCO:0000010, XCO:0000012, XCO:0000014, XCO:0000015, XCO:0000017, …
RGD:JRS 15 XCO:0000120, XCO:0000133, XCO:0000152, XCO:0000153, XCO:0000158, …
RGD:SL 1 XCO:0000138
RGD:MRD 1 XCO:0000166

UniProt: UniProt Protein

Overall, there were 1 invalid xrefs to external prefixed with UniProt (standardized to Bioregistry prefix uniprot) that did not match the standard pattern ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$.

external_xref usages_count usages
UniProt:419947 1 XCO:0001037