This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in xco
. See the GitHub repository.
Cellosaurus
: CellosaurusOverall, there were 2 invalid
xrefs to external prefixed with Cellosaurus
(standardized to Bioregistry
prefix cellosaurus
) that
did not match the standard pattern ^[A-Z0-9]{4}$
.
external_xref | usages_count | usages |
---|---|---|
Cellosaurus:CVCL_5712 |
1 | XCO:0000835 |
Cellosaurus:CVCL_3537 |
1 | XCO:0001045 |
CHEBI
: Chemical Entities of Biological InterestOverall, there were 1 invalid
xrefs to external prefixed with CHEBI
(standardized to Bioregistry
prefix chebi
) that
did not match the standard pattern ^\d+$
.
external_xref | usages_count | usages |
---|---|---|
CHEBI:25698he |
1 | XCO:0000799 |
CHEMBL
: ChEMBLOverall, there were 1 invalid
xrefs to external prefixed with CHEMBL
(standardized to Bioregistry
prefix chembl
) that
did not match the standard pattern ^CHEMBL\d+$
.
external_xref | usages_count | usages |
---|---|---|
CHEMBL:105608 |
1 | XCO:0000322 |
MESH
: Medical Subject HeadingsOverall, there were 2 invalid
xrefs to external prefixed with MESH
(standardized to Bioregistry
prefix mesh
) that
did not match the standard pattern ^(C|D|M)\d{6,9}$
.
external_xref | usages_count | usages |
---|---|---|
MESH:68011802 |
2 | XCO:0000617, XCO:0000617 |
PMID
: PubMedOverall, there were 3 invalid
xrefs to external prefixed with PMID
(standardized to Bioregistry
prefix pubmed
) that
did not match the standard pattern ^\d+$
.
external_xref | usages_count | usages |
---|---|---|
PMID:_21543068 |
1 | XCO:0001532 |
PMID:_33008419 |
1 | XCO:0001535 |
PMID:_28143577 |
1 | XCO:0001576 |
RGD
: Rat Genome DatabaseOverall, there were 41 invalid
xrefs to external prefixed with RGD
(standardized to Bioregistry
prefix rgd
) that
did not match the standard pattern ^\d{4,}$
.
external_xref | usages_count | usages |
---|---|---|
RGD:MS |
24 | XCO:0000010, XCO:0000012, XCO:0000014, XCO:0000015, XCO:0000017, … |
RGD:JRS |
15 | XCO:0000120, XCO:0000133, XCO:0000152, XCO:0000153, XCO:0000158, … |
RGD:SL |
1 | XCO:0000138 |
RGD:MRD |
1 | XCO:0000166 |
UniProt
: UniProt ProteinOverall, there were 1 invalid
xrefs to external prefixed with UniProt
(standardized to Bioregistry
prefix uniprot
) that
did not match the standard pattern ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$
.
external_xref | usages_count | usages |
---|---|---|
UniProt:419947 |
1 | XCO:0001037 |