This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in vt. See the GitHub repository.
MESH: Medical Subject HeadingsOverall, there were 2 invalid
xrefs to external prefixed with MESH (standardized to Bioregistry
prefix mesh) that
did not match the standard pattern ^(C|D)\d{6,9}$.
| external_xref | usages_count | usages |
|---|---|---|
MESH:D12.776.034.145 |
1 | VT:0002484 |
MESH:D12.776.049.790 |
1 | VT:0002486 |
MeSH: Medical Subject HeadingsOverall, there were 2 invalid
xrefs to external prefixed with MeSH (standardized to Bioregistry
prefix mesh) that
did not match the standard pattern ^(C|D)\d{6,9}$.
| external_xref | usages_count | usages |
|---|---|---|
MeSH:D12.776.049.790 |
1 | VT:0010037 |
MeSH:D12.644.276.374.500.800 |
1 | VT:0010160 |
MGI: Mouse Genome InformaticsOverall, there were 142 invalid
xrefs to external prefixed with MGI (standardized to Bioregistry
prefix mgi) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
MGI:smb |
73 | VT:0000013, VT:0000061, VT:0000135, VT:0000179, VT:0000269, … |
MGI:cwg |
22 | VT:0000023, VT:0000179, VT:0001777, VT:0002204, VT:0002278, … |
MGI:MP |
20 | VT:0000023, VT:0000895, VT:0000896, VT:0000968, VT:0000974, … |
MGI:csmith |
12 | VT:0000940, VT:0000977, VT:0001332, VT:0001747, VT:0001884, … |
MGI:mb |
10 | VT:0010471, VT:0010472, VT:0010474, VT:0010512, VT:0010689, … |
MGI:anna |
2 | VT:0004291, VT:0006028 |
MGI:brs |
1 | VT:0003847 |
MGI:hdene |
1 | VT:0010158 |
MGI:pvb |
1 | VT:0010162 |
MP: Mammalian Phenotype OntologyOverall, there were 4 invalid
xrefs to external prefixed with MP (standardized to Bioregistry
prefix mp) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
MP:001324 |
1 | VT:0001324 |
MP:00004293 |
1 | VT:0004293 |
MP:MammalianPhenotype |
1 | VT:0010442 |
MP:00003257 |
1 | VT:0010453 |
MS: Mass spectrometry ontologyOverall, there were 4 invalid
xrefs to external prefixed with MS (standardized to Bioregistry
prefix ms) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
MS:RGD |
4 | VT:0000466, VT:0010213, VT:0010239, VT:1000711 |
PMID: PubMedOverall, there were 1 invalid
xrefs to external prefixed with PMID (standardized to Bioregistry
prefix pubmed) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
PMID:0-87893-258-5 |
1 | VT:0003359 |
RGD: Rat Genome DatabaseOverall, there were 389 invalid
xrefs to external prefixed with RGD (standardized to Bioregistry
prefix rgd) that
did not match the standard pattern ^\d{4,}$.
| external_xref | usages_count | usages |
|---|---|---|
RGD:cur |
254 | VT:0000032, VT:0002871, VT:0002928, VT:0002929, VT:0002932, … |
RGD:MS |
62 | VT:0000073, VT:0000222, VT:0000524, VT:0000535, VT:0000544, … |
RGD:dhm |
55 | VT:0000050, VT:0000066, VT:0000153, VT:0000154, VT:0000170, … |
RGD:ms |
18 | VT:0002128, VT:0002295, VT:0002504, VT:0002726, VT:0002792, … |
RGD : Rat Genome DatabaseOverall, there were 1 invalid
xrefs to external prefixed with RGD (standardized to Bioregistry
prefix rgd) that
did not match the standard pattern ^\d{4,}$.
| external_xref | usages_count | usages |
|---|---|---|
RGD :MS |
1 | VT:0010265 |
VTO: Vertebrate Taxonomy OntologyOverall, there were 453 invalid
xrefs to external prefixed with VTO (standardized to Bioregistry
prefix vto) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
VTO:INRA |
229 | VT:0001131, VT:0010001, VT:0010004, VT:0010018, VT:0010029, … |
VTO:CP |
224 | VT:0000001, VT:0000009, VT:0000072, VT:0000116, VT:0000444, … |