This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in pw. See the GitHub repository.
KEGG: Kyoto Encyclopedia of Genes and GenomesOverall, there were 78 invalid
xrefs to external prefixed with KEGG (standardized to Bioregistry
prefix kegg) that
did not match the standard pattern ^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$.
| external_xref | usages_count | usages |
|---|---|---|
KEGG:00760 |
2 | PW:0000166, PW:0001010 |
KEGG:04610 |
2 | PW:0000474, PW:0000502 |
KEGG:00010 |
2 | PW:0000640, PW:0000641 |
KEGG:04310 |
1 | PW:0000008 |
KEGG:00061 |
1 | PW:0000029 |
KEGG:00230 |
1 | PW:0000031 |
KEGG:00240 |
1 | PW:0000032 |
KEGG:00920 |
1 | PW:0000037 |
KEGG:00120 |
1 | PW:0000039 |
KEGG:00140 |
1 | PW:0000040 |
KEGG:00052 |
1 | PW:0000042 |
KEGG:00620 |
1 | PW:0000043 |
KEGG:00340 |
1 | PW:0000051 |
KEGG:00350 |
1 | PW:0000052 |
KEGG:00360 |
1 | PW:0000053 |
KEGG:00380 |
1 | PW:0000054 |
KEGG:00280 |
1 | PW:0000071 |
KEGG:00310 |
1 | PW:0000073 |
KEGG:00300 |
1 | PW:0000074 |
KEGG:00460 |
1 | PW:0000078 |
KEGG:00480 |
1 | PW:0000134 |
KEGG:00740 |
1 | PW:0000137 |
KEGG:00750 |
1 | PW:0000138 |
KEGG:00780 |
1 | PW:0000139 |
KEGG:00790 |
1 | PW:0000140 |
KEGG:00130 |
1 | PW:0000142 |
KEGG:map4910 |
1 | PW:0000143 |
KEGG:03050 |
1 | PW:0000144 |
KEGG:00520 |
1 | PW:0000152 |
KEGG:00604 |
1 | PW:0000164 |
KEGG:00770 |
1 | PW:0000167 |
KEGG:00603 |
1 | PW:0000196 |
KEGG:00600 |
1 | PW:0000197 |
KEGG:03440 |
1 | PW:0000202 |
KEGG:04151 |
1 | PW:0000232 |
KEGG:04140 |
1 | PW:0000278 |
KEGG:04144 |
1 | PW:0000281 |
KEGG:04728 |
1 | PW:0000394 |
KEGG:04070 |
1 | PW:0000595 |
KEGG:04141 |
1 | PW:0000638 |
KEGG:03430 |
1 | PW:0000662 |
KEGG:04620 |
1 | PW:0000814 |
KEGG:04622 |
1 | PW:0000816 |
KEGG:04621 |
1 | PW:0000817 |
KEGG:04660 |
1 | PW:0000821 |
KEGG:04662 |
1 | PW:0000822 |
KEGG:04612 |
1 | PW:0000825 |
KEGG:04060 |
1 | PW:0000828 |
KEGG:04062 |
1 | PW:0000829 |
KEGG:04725 |
1 | PW:0000841 |
KEGG:04724 |
1 | PW:0000844 |
KEGG:04727 |
1 | PW:0000848 |
KEGG:05212 |
1 | PW:0000961 |
KEGG:04744 |
1 | PW:0000962 |
KEGG:map5140 |
1 | PW:0001047 |
KEGG:map5142 |
1 | PW:0001048 |
KEGG:map5143 |
1 | PW:0001049 |
KEGG:map5146 |
1 | PW:0001053 |
KEGG:00190 |
1 | PW:0001059 |
KEGG:00785 |
1 | PW:0001063 |
KEGG:03460 |
1 | PW:0001065 |
KEGG:03008 |
1 | PW:0001066 |
KEGG:00062 |
1 | PW:0001136 |
KEGG:00565 |
1 | PW:0001138 |
KEGG:04145 |
1 | PW:0001145 |
KEGG:00100 |
1 | PW:0001152 |
KEGG:00232 |
1 | PW:0001153 |
KEGG:00531 |
1 | PW:0001154 |
KEGG:00561 |
1 | PW:0001156 |
KEGG:00592 |
1 | PW:0001158 |
KEGG:00970 |
1 | PW:0001159 |
KEGG:03013 |
1 | PW:0001160 |
KEGG:03018 |
1 | PW:0001161 |
KEGG:04723 |
1 | PW:0001164 |
KEGG:04721 |
1 | PW:0002423 |
MeSH: Medical Subject HeadingsOverall, there were 6 invalid
xrefs to external prefixed with MeSH (standardized to Bioregistry
prefix mesh) that
did not match the standard pattern ^(C|D)\d{6,9}$.
| external_xref | usages_count | usages |
|---|---|---|
MeSH:MeSH |
3 | PW:0000627, PW:0000631, PW:0000633 |
MeSH:Medical_Subject_Headings |
2 | PW:0000517, PW:0001476 |
MeSH:MeSH_descriptor |
1 | PW:0001414 |
NCI: NCI ThesaurusOverall, there were 3 invalid
xrefs to external prefixed with NCI (standardized to Bioregistry
prefix ncit) that
did not match the standard pattern ^C\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NCI:NCI |
2 | PW:0001211, PW:0001212 |
NCI:www.cancer.gov |
1 | PW:0001217 |
OMIM: Online Mendelian Inheritance in ManOverall, there were 3 invalid
xrefs to external prefixed with OMIM (standardized to Bioregistry
prefix omim) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
OMIM:OMIM |
3 | PW:0000625, PW:0000627, PW:0000631 |
PID: NCI Pathway Interaction Database: PathwayOverall, there were 49 invalid
xrefs to external prefixed with PID (standardized to Bioregistry
prefix pid.pathway) that
did not match the standard pattern ^\b[0-9a-f]{8}\b-[0-9a-f]{4}-[0-9a-f]{4}-[0-9a-f]{4}-\b[0-9a-f]{12}\b$.
| external_xref | usages_count | usages |
|---|---|---|
PID:200168 |
1 | PW:0000122 |
PID:200172 |
1 | PW:0000122 |
PID:200014 |
1 | PW:0000143 |
PID:200101 |
1 | PW:0000170 |
PID:200159 |
1 | PW:0000170 |
PID:200096 |
1 | PW:0000180 |
PID:200018 |
1 | PW:0000198 |
PID:200077 |
1 | PW:0000201 |
PID:200015 |
1 | PW:0000204 |
PID:200197 |
1 | PW:0000232 |
PID:200102 |
1 | PW:0000233 |
PID:200100 |
1 | PW:0000238 |
PID:200109 |
1 | PW:0000243 |
PID:200188 |
1 | PW:0000243 |
PID:200149 |
1 | PW:0000297 |
PID:200162 |
1 | PW:0000297 |
PID:200201 |
1 | PW:0000297 |
PID:200052 |
1 | PW:0000322 |
PID:200059 |
1 | PW:0000322 |
PID:200142 |
1 | PW:0000322 |
PID:200204 |
1 | PW:0000322 |
PID:200216 |
1 | PW:0000322 |
PID:200220 |
1 | PW:0000328 |
PID:200144 |
1 | PW:0000330 |
PID:200029 |
1 | PW:0000331 |
PID:200036 |
1 | PW:0000360 |
PID:200202 |
1 | PW:0000360 |
PID:200195 |
1 | PW:0000387 |
PID:200062 |
1 | PW:0000388 |
PID:200005 |
1 | PW:0000506 |
PID:200146 |
1 | PW:0000516 |
PID:200020 |
1 | PW:0000597 |
PID:200080 |
1 | PW:0000681 |
PID:200068 |
1 | PW:0000682 |
PID:200089 |
1 | PW:0000883 |
PID:200129 |
1 | PW:0000896 |
PID:200098 |
1 | PW:0000907 |
PID:200022 |
1 | PW:0000912 |
PID:200045 |
1 | PW:0000914 |
PID:200154 |
1 | PW:0000915 |
PID:200028 |
1 | PW:0000916 |
PID:200046 |
1 | PW:0000960 |
PID:200054 |
1 | PW:0000960 |
PID:200076 |
1 | PW:0000960 |
PID:200085 |
1 | PW:0000960 |
PID:200123 |
1 | PW:0000960 |
PID:200211 |
1 | PW:0000960 |
PID:200119 |
1 | PW:0000961 |
PID:200019 |
1 | PW:0000970 |
PMID: PubMedOverall, there were 1 invalid
xrefs to external prefixed with PMID (standardized to Bioregistry
prefix pubmed) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
PMID:9212076; |
1 | PW:0000414 |
PubMed: PubMedOverall, there were 14 invalid
xrefs to external prefixed with PubMed (standardized to Bioregistry
prefix pubmed) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
PubMed:2003,_v._285,_f1-f8. |
2 | PW:0000182, PW:0000183 |
PubMed:2001,_v.27,_171-179. |
1 | PW:0000144 |
PubMed:Neuron,_2004,_v42,_p897-912;_Cellular_Signaling,_2004,_v16,_p127-36. |
1 | PW:0000169 |
PubMed:2004,_v._17,_38047 |
1 | PW:0000174 |
PubMed:2004,_v.17,_38-47. |
1 | PW:0000175 |
PubMed:2004,_v.29(1),_32-38. |
1 | PW:0000179 |
PubMed:TIBS,_2004,_v._29(1),_32-38. |
1 | PW:0000180 |
PubMed:Several_articles_in_PubMed |
1 | PW:0000204 |
PubMed:TIBS,_2004,_v29_(5),_p265-273 |
1 | PW:0000206 |
PubMed:Science,_2002,_v296,_p1564-7 |
1 | PW:0000210 |
PubMed:Nature_Reviews,_Mol._Cell_Biology,_2001,_v2,_p369-77. |
1 | PW:0000231 |
PubMed:Annu._Rev._Neursci._2003,_v26,_701-28. |
1 | PW:0000274 |
PubMed:Several_articles |
1 | PW:0000668 |
PW: Pathway ontologyOverall, there were 8 invalid
xrefs to external prefixed with PW (standardized to Bioregistry
prefix pw) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
PW:InHouse |
5 | PW:0000287, PW:0000288, PW:0000292, PW:0000293, PW:0000300 |
PW:Inhouse |
2 | PW:0000289, PW:0000290 |
PW:InHouse3 |
1 | PW:0000298 |
Reactome: ReactomeOverall, there were 8 invalid
xrefs to external prefixed with Reactome (standardized to Bioregistry
prefix reactome) that
did not match the standard pattern ^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$.
| external_xref | usages_count | usages |
|---|---|---|
Reactome:REACT_11061.4 |
1 | PW:0000169 |
Reactome:REACT_15380.1 |
1 | PW:0000176 |
Reactome:REACT_11045.1 |
1 | PW:0000201 |
Reactome:REACT_14820.1 |
1 | PW:0000211 |
Reactome:REACT_1208.1 |
1 | PW:0000304 |
Reactome:REACT_13705.1 |
1 | PW:0000375 |
Reactome:REACT_15530.1 |
1 | PW:0000543 |
Reactome:REACT_212.3 |
1 | PW:0000554 |
RGD: Rat Genome DatabaseOverall, there were 4 invalid
xrefs to external prefixed with RGD (standardized to Bioregistry
prefix rgd) that
did not match the standard pattern ^\d{4,}$.
| external_xref | usages_count | usages |
|---|---|---|
RGD:InHouse_dictionary |
3 | PW:0000332, PW:0000646, PW:0000683 |
RGD:InHouse |
1 | PW:0000684 |
SMP: Small Molecule Pathway DatabaseOverall, there were 68 invalid
xrefs to external prefixed with SMP (standardized to Bioregistry
prefix smpdb) that
did not match the standard pattern ^SMP\d+$.
| external_xref | usages_count | usages |
|---|---|---|
SMP:00445 |
2 | PW:0000216, PW:0000396 |
SMP:00018 |
2 | PW:0000523, PW:0001158 |
SMP:00057 |
1 | PW:0000026 |
SMP:00456 |
1 | PW:0000029 |
SMP:00050 |
1 | PW:0000031 |
SMP:00046 |
1 | PW:0000032 |
SMP:00355 |
1 | PW:0000034 |
SMP:00035 |
1 | PW:0000039 |
SMP:00130 |
1 | PW:0000040 |
SMP:00043 |
1 | PW:0000042 |
SMP:00060 |
1 | PW:0000043 |
SMP:00031 |
1 | PW:0000045 |
SMP:00011 |
1 | PW:0000046 |
SMP:00013 |
1 | PW:0000049 |
SMP:00044 |
1 | PW:0000051 |
SMP:00006 |
1 | PW:0000052 |
SMP:00063 |
1 | PW:0000054 |
SMP:00051 |
1 | PW:0000058 |
SMP:00016 |
1 | PW:0000064 |
SMP:00073 |
1 | PW:0000065 |
SMP:00071 |
1 | PW:0000069 |
SMP:00032 |
1 | PW:0000071 |
SMP:00037 |
1 | PW:0000073 |
SMP:00059 |
1 | PW:0000076 |
SMP:00007 |
1 | PW:0000077 |
SMP:00478 |
1 | PW:0000130 |
SMP:00029 |
1 | PW:0000133 |
SMP:00015 |
1 | PW:0000134 |
SMP:00070 |
1 | PW:0000137 |
SMP:00017 |
1 | PW:0000138 |
SMP:00066 |
1 | PW:0000139 |
SMP:00053 |
1 | PW:0000140 |
SMP:00074 |
1 | PW:0000141 |
SMP:00065 |
1 | PW:0000142 |
SMP:00391 |
1 | PW:0000143 |
SMP:00045 |
1 | PW:0000152 |
SMP:00462 |
1 | PW:0000154 |
SMP:00027 |
1 | PW:0000167 |
SMP:00034 |
1 | PW:0000197 |
SMP:00025 |
1 | PW:0000354 |
SMP:00055 |
1 | PW:0000438 |
SMP:00023 |
1 | PW:0000454 |
SMP:00075 |
1 | PW:0000460 |
SMP:00040 |
1 | PW:0000640 |
SMP:00128 |
1 | PW:0000641 |
SMP:00048 |
1 | PW:0001010 |
SMP:00464 |
1 | PW:0001016 |
SMP:00338 |
1 | PW:0001070 |
SMP:00333 |
1 | PW:0001071 |
SMP:00054 |
1 | PW:0001136 |
SMP:00039 |
1 | PW:0001156 |
SMP:00012 |
1 | PW:0001235 |
SMP:00467 |
1 | PW:0001300 |
SMP:00457 |
1 | PW:0001364 |
SMP:00206 |
1 | PW:0001805 |
SMP:00479 |
1 | PW:0001877 |
SMP:00374 |
1 | PW:0001992 |
SMP:00581 |
1 | PW:0001992 |
SMP:00573 |
1 | PW:0001993 |
SMP:00554 |
1 | PW:0001995 |
SMP:00444 |
1 | PW:0002072 |
SMP:00182 |
1 | PW:0002092 |
SMP:00496 |
1 | PW:0002093 |
SMP:00725 |
1 | PW:0002101 |
SMP:00024 |
1 | PW:0002285 |
SMP:00465 |
1 | PW:0002292 |