oquat

pato

This document details the invalid local unique identifiers used in CURIEs for node, synonym, and definition cross-references in pato. See the GitHub repository.

ENVO: Environment Ontology

Overall, there were 3 invalid xrefs to external prefixed with ENVO (standardized to Bioregistry prefix envo) that did not match the standard pattern ^\d{7,8}$.

external_xref	usages_count	usages
ENVO:pb	3	PATO:0015017, PATO:0015018, PATO:0015029

GO: Gene Ontology

Overall, there were 3 invalid xrefs to external prefixed with GO (standardized to Bioregistry prefix go) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
GO:GO	3	PATO:0001440, PATO:0001441, PATO:0001720

ISSN: International Standard Serial Number

Overall, there were 1 invalid xrefs to external prefixed with ISSN (standardized to Bioregistry prefix issn) that did not match the standard pattern ^\d{4}-\d{3}[\dX]$.

external_xref	usages_count	usages
ISSN:9781496335418	1	PATO:0001744

Medline: PubMed

Overall, there were 1 invalid xrefs to external prefixed with Medline (standardized to Bioregistry prefix pubmed) that did not match the standard pattern ^\d+$.

external_xref	usages_count	usages
Medline:http://www.nlm.nih.gov/medlineplus	1	PATO:0002048

neurolex: NIF Standard Ontology: Neurolex

Overall, there were 2 invalid xrefs to external prefixed with neurolex (standardized to Bioregistry prefix neurolex) that did not match the standard pattern ^\d+$.

external_xref	usages_count	usages
neurolex:http://neurolex.org/	1	PATO:0002216
neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality	1	PATO:0002217

OBI: Ontology for Biomedical Investigations

Overall, there were 1 invalid xrefs to external prefixed with OBI (standardized to Bioregistry prefix obi) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
OBI:OBI	1	PATO:0001985

OBO_REL: Relation Ontology

Overall, there were 2 invalid xrefs to external prefixed with OBO_REL (standardized to Bioregistry prefix ro) that did not match the standard pattern ^(HOM)?\d{7}$.

external_xref	usages_count	usages
OBO_REL:has_part	1	PATO:0001555
OBO_REL:lacks_part	1	PATO:0002000

PATO: Phenotype And Trait Ontology

Overall, there were 69 invalid xrefs to external prefixed with PATO (standardized to Bioregistry prefix pato) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
PATO:GVG	54	PATO:0000911, PATO:0000912, PATO:0001153, PATO:0001304, PATO:0001313, …
PATO:MAH	8	PATO:0000428, PATO:0001559, PATO:0001624, PATO:0001625, PATO:0002629, …
PATO:LC	2	PATO:0000694, PATO:0002363
PATO:WS	1	PATO:0002311
PATO:WC	1	PATO:0002320
PATO:PG	1	PATO:0002389
PATO:DS	1	PATO:0002390
PATO:JL	1	PATO:0002454

TO: Plant Trait Ontology

Overall, there were 2 invalid xrefs to external prefixed with TO (standardized to Bioregistry prefix to) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
TO:TO	2	PATO:0001540, PATO:0001541

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