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obci

This document details the invalid local unique identifiers used in CURIEs for node, synonym, and definition cross-references in obci.

CARO: Common Anatomy Reference Ontology

Overall, there were 1 invalid xrefs to external prefixed with CARO (standardized to Bioregistry prefix caro) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
CARO:mah 1 CL:0000000

ICD9CM: International Classification of Diseases, 9th Revision, Clinical Modification

Overall, there were 3 invalid xrefs to external prefixed with ICD9CM (standardized to Bioregistry prefix icd9cm) that did not match the standard pattern ^([\dA-Z]\d{2}(\.\d{1,3}|))|(\d{2}(\.\d{1,2}|))$.

external_xref usages_count usages
ICD9CM:042-042.99 1 DOID:526
ICD9CM:520-579.99 1 DOID:77
ICD9CM:060-066.99 1 DOID:934

KEGG: Kyoto Encyclopedia of Genes and Genomes

Overall, there were 2 invalid xrefs to external prefixed with KEGG (standardized to Bioregistry prefix kegg) that did not match the standard pattern ^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$.

external_xref usages_count usages
KEGG:05323 1 DOID:7148
KEGG:05210 1 DOID:9256

MESH: Medical Subject Headings

Overall, there were 1 invalid xrefs to external prefixed with MESH (standardized to Bioregistry prefix mesh) that did not match the standard pattern ^(C|D|M)\d{6,9}$.

external_xref usages_count usages
MESH:A12.207 1 UBERON:0006314

MIM: Online Mendelian Inheritance in Man

Overall, there were 2 invalid xrefs to external prefixed with MIM (standardized to Bioregistry prefix omim) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
MIM:PS275200 1 DOID:0050328
MIM:PS210200 1 DOID:0050710

MP: Mammalian Phenotype Ontology

Overall, there were 1 invalid xrefs to external prefixed with MP (standardized to Bioregistry prefix mp) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
MP:MP 1 UBERON:0000173

PDBeChem: Chemical Component Dictionary

Overall, there were 1 invalid xrefs to external prefixed with PDBeChem (standardized to Bioregistry prefix pdb-ccd) that did not match the standard pattern ^\w{1,3}$.

external_xref usages_count usages
PDBeChem:MET_LFOH 1 CHEBI:16643

PRO: Protein Ontology

Overall, there were 9 invalid xrefs to external prefixed with PRO (standardized to Bioregistry prefix pr) that did not match the standard pattern ^(?:\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\d+)?)$.

external_xref usages_count usages
PRO:DAN 6 PR:000000001, PR:000000001, PR:000050323, PR:000050323, PR:000050384, …
PRO:DNx 2 PR:000003918, PR:000003918
PRO:WCB 1 PR:000000001

SO: Sequence types and features ontology

Overall, there were 2 invalid xrefs to external prefixed with SO (standardized to Bioregistry prefix so) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
SO:immuno_workshop 2 SO:0000704, SO:0001025
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