This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in mondo. See the GitHub repository.
DO: Human Disease OntologyOverall, there were 1 invalid
xrefs to external prefixed with DO (standardized to Bioregistry
prefix doid) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
DO:wk,ls |
1 | MONDO:0000275 |
GARD: Genetic and Rare Diseases Information CenterOverall, there were 1 invalid
xrefs to external prefixed with GARD (standardized to Bioregistry
prefix gard) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
GARD:0003995-def |
1 | MONDO:0044749 |
ICD9: International Classification of Diseases, 9th RevisionOverall, there were 31 invalid
xrefs to external prefixed with ICD9 (standardized to Bioregistry
prefix icd9) that
did not match the standard pattern ^(\d\d\d|V\d\d|E[8-9]\d\d)(\.\d{1,2})?$.
| external_xref | usages_count | usages |
|---|---|---|
ICD9:520-579.99 |
2 | MONDO:0004335, MONDO:0005020 |
ICD9:001-009.99 |
1 | MONDO:0000916 |
ICD9:614-616.99 |
1 | MONDO:0000922 |
ICD9:110-118.99 |
1 | MONDO:0002041 |
ICD9:610-612.99 |
1 | MONDO:0002657 |
ICD9:600-608.99 |
1 | MONDO:0003150 |
ICD9:240-246.99 |
1 | MONDO:0003240 |
ICD9:350-359.99 |
1 | MONDO:0003620 |
ICD9:230-234.99 |
1 | MONDO:0004647 |
ICD9:120-129.99 |
1 | MONDO:0004664 |
ICD9:390-459.99 |
1 | MONDO:0004995 |
ICD9:420-429.99 |
1 | MONDO:0004995 |
ICD9:490-496.99 |
1 | MONDO:0005002 |
ICD9:410-414.99 |
1 | MONDO:0005010 |
ICD9:560-569.99 |
1 | MONDO:0005020 |
ICD9:570-579.99 |
1 | MONDO:0005020 |
ICD9:401-405.99 |
1 | MONDO:0005044 |
ICD9:140-239.99 |
1 | MONDO:0005070 |
ICD9:290-299.99 |
1 | MONDO:0005084 |
ICD9:460-519.99 |
1 | MONDO:0005087 |
ICD9:500-508.99 |
1 | MONDO:0005087 |
ICD9:510-519.99 |
1 | MONDO:0005087 |
ICD9:060-066.99 |
1 | MONDO:0005108 |
ICD9:042-042.99 |
1 | MONDO:0005109 |
ICD9:210-229.99 |
1 | MONDO:0005165 |
ICD9:280-289.99 |
1 | MONDO:0005570 |
ICD9:540-543.99 |
1 | MONDO:0005649 |
ICD9:430-438.99 |
1 | MONDO:0011057 |
ICD9:390-392.99 |
1 | MONDO:0017767 |
ICD9:209-209.99 |
1 | MONDO:0019496 |
ICD9CM: International Classification of Diseases, 9th Revision, Clinical ModificationOverall, there were 2 invalid
xrefs to external prefixed with ICD9CM (standardized to Bioregistry
prefix icd9cm) that
did not match the standard pattern ^([\dA-Z]\d{2}(\.\d{1,3}|))|(\d{2}(\.\d{1,2}|))$.
| external_xref | usages_count | usages |
|---|---|---|
ICD9CM:280-289.99 |
1 | MONDO:0005570 |
ICD9CM:390-392.99 |
1 | MONDO:0017767 |
ICDO: International Classification of Diseases for OncologyOverall, there were 9 invalid
xrefs to external prefixed with ICDO (standardized to Bioregistry
prefix icdo) that
did not match the standard pattern ^[8-9]\d{3}(/[0-3])?$.
| external_xref | usages_count | usages |
|---|---|---|
ICDO:0000/0 |
3 | MONDO:0003011, MONDO:0006131, MONDO:0006397 |
ICDO:8800/9 |
1 | MONDO:0004309 |
ICDO:M9861/3 |
1 | MONDO:0004996 |
ICDO:981-983 |
1 | MONDO:0005402 |
ICDO:8480/6 |
1 | MONDO:0017048 |
ICDO:8010/6 |
1 | MONDO:0024879 |
ICDO:8000/6 |
1 | MONDO:0024883 |
MedDRA: Medical Dictionary for Regulatory Activities TerminologyOverall, there were 1 invalid
xrefs to external prefixed with MedDRA (standardized to Bioregistry
prefix meddra) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
MedDRA:C1535926 |
1 | MONDO:0700092 |
MEDGEN: Human Medical GeneticsOverall, there were 1 invalid
xrefs to external prefixed with MEDGEN (standardized to Bioregistry
prefix medgen) that
did not match the standard pattern ^(CN)?\d{2,7}$.
| external_xref | usages_count | usages |
|---|---|---|
MEDGEN:C4750849 |
1 | MONDO:0018273 |
MESH: Medical Subject HeadingsOverall, there were 6 invalid
xrefs to external prefixed with MESH (standardized to Bioregistry
prefix mesh) that
did not match the standard pattern ^(C|D|M)\d{6,9}$.
| external_xref | usages_count | usages |
|---|---|---|
MESH:1622152 |
2 | MONDO:0000890, MONDO:0000890 |
MESH:D018382-modified |
1 | MONDO:0001328 |
MESH:D014077-modified |
1 | MONDO:0002325 |
MESH:D014253-modified |
1 | MONDO:0005995 |
MESH:D014323-modified |
1 | MONDO:0005998 |
MONDO: Mondo Disease OntologyOverall, there were 19,733 invalid
xrefs to external prefixed with MONDO (standardized to Bioregistry
prefix mondo) that
did not match the standard pattern ^\d{7}$.
NCIT: NCI ThesaurusOverall, there were 3 invalid
xrefs to external prefixed with NCIT (standardized to Bioregistry
prefix ncit) that
did not match the standard pattern ^[CRPA]\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NCIT:C128346-modified |
1 | MONDO:0005429 |
NCIT:C3131-modified |
1 | MONDO:0021094 |
NCIT:C84543-modified |
1 | MONDO:0043209 |
NIFSTD: NIF Standard OntologyOverall, there were 18 invalid
xrefs to external prefixed with NIFSTD (standardized to Bioregistry
prefix nif.std) that
did not match the standard pattern ^BAMSC\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NIFSTD:birnlex_2092 |
1 | MONDO:0004975 |
NIFSTD:birnlex_12566 |
1 | MONDO:0004976 |
NIFSTD:birnlex_12754 |
1 | MONDO:0004985 |
NIFSTD:birnlex_406 |
1 | MONDO:0004992 |
NIFSTD:birnlex_12718 |
1 | MONDO:0005027 |
NIFSTD:birnlex_12617 |
1 | MONDO:0005033 |
NIFSTD:birnlex_12633 |
1 | MONDO:0005035 |
NIFSTD:birnlex_12631 |
1 | MONDO:0005072 |
NIFSTD:birnlex_12669 |
1 | MONDO:0005084 |
NIFSTD:birnlex_2104 |
1 | MONDO:0005090 |
NIFSTD:birnlex_12783 |
1 | MONDO:0005098 |
NIFSTD:birnlex_12733 |
1 | MONDO:0005115 |
NIFSTD:nlx_dys_20090303 |
1 | MONDO:0005139 |
NIFSTD:birnlex_12679 |
1 | MONDO:0005146 |
NIFSTD:birnlex_12812 |
1 | MONDO:0005150 |
NIFSTD:birnlex_2098 |
1 | MONDO:0005180 |
NIFSTD:nlx_dys_20090502 |
1 | MONDO:0008608 |
NIFSTD:nlx_dys_20090302 |
1 | MONDO:0011122 |
PMID: PubMedOverall, there were 1 invalid
xrefs to external prefixed with PMID (standardized to Bioregistry
prefix pubmed) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
PMID:PMID%3A+19243607 |
1 | MONDO:0008644 |