This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in fypo. See the GitHub repository.
GO: Gene OntologyOverall, there were 8 invalid
xrefs to external prefixed with GO (standardized to Bioregistry
prefix go) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
GO:0036124,PomBase:mah |
3 | FYPO:0007507, FYPO:0007508, FYPO:0007509 |
GO:006355 |
2 | FYPO:0004526, FYPO:0004527 |
GO:001322 |
1 | FYPO:0003561 |
GO:030995 |
1 | FYPO:0004270 |
GO:003118 |
1 | FYPO:0007501 |
PMID: PubMedOverall, there were 2 invalid
xrefs to external prefixed with PMID (standardized to Bioregistry
prefix pubmed) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
| `PMID:34805795 | Â | Â |
| PomBase:val` | 1 | FYPO:0007907 |
PMID::8247131 |
1 | FYPO:0001686 |
PomBase: PomBaseOverall, there were 18,221 invalid
xrefs to external prefixed with PomBase (standardized to Bioregistry
prefix pombase) that
did not match the standard pattern ^S\w+(\.)?\w+(\.)?$.
| external_xref | usages_count | usages |
|---|---|---|
PomBase:mah |
14833 | FYPO:0000001, FYPO:0000001, FYPO:0000002, FYPO:0000002, FYPO:0000003, … |
PomBase:vw |
1976 | FYPO:0000012, FYPO:0000013, FYPO:0000014, FYPO:0000016, FYPO:0000017, … |
PomBase:al |
1075 | FYPO:0000006, FYPO:0000061, FYPO:0000090, FYPO:0000102, FYPO:0000108, … |
PomBase:mlr |
208 | FYPO:0002061, FYPO:0002400, FYPO:0003787, FYPO:0004605, FYPO:0006606, … |
PomBase:jh |
93 | FYPO:0000129, FYPO:0000229, FYPO:0000241, FYPO:0000284, FYPO:0000316, … |
PomBase:val |
25 | FYPO:0000901, FYPO:0000901, FYPO:0007902, FYPO:0007903, FYPO:0007906, … |
PomBase:amc |
3 | FYPO:0004251, FYPO:0006087, FYPO:0006318 |
PomBase:mp |
2 | FYPO:0001404, FYPO:0001405 |
PomBase:gs |
2 | FYPO:0002484, FYPO:0002485 |
PomBase:ch |
1 | FYPO:0000153 |
PomBase:pr |
1 | FYPO:0005334 |
PomBase:mahle |
1 | FYPO:0007633 |
PomBase:sm |
1 | FYPO:0007683 |
Pombase: PomBaseOverall, there were 39 invalid
xrefs to external prefixed with Pombase (standardized to Bioregistry
prefix pombase) that
did not match the standard pattern ^S\w+(\.)?\w+(\.)?$.
| external_xref | usages_count | usages |
|---|---|---|
Pombase:vw |
29 | FYPO:0002440, FYPO:0003290, FYPO:0004022, FYPO:0004086, FYPO:0004159, … |
Pombase:al |
6 | FYPO:0004989, FYPO:0005527, FYPO:0005528, FYPO:0006260, FYPO:0007084, … |
Pombase:mah |
4 | FYPO:0005385, FYPO:0005396, FYPO:0006770, FYPO:0007288 |
SGD: Saccharomyces Genome DatabaseOverall, there were 292 invalid
xrefs to external prefixed with SGD (standardized to Bioregistry
prefix sgd) that
did not match the standard pattern ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$.
| external_xref | usages_count | usages |
|---|---|---|
SGD:phenotype_annotation |
292 | FYPO:0000005, FYPO:0000008, FYPO:0000011, FYPO:0000012, FYPO:0000023, … |
SO: Sequence types and features ontologyOverall, there were 1 invalid
xrefs to external prefixed with SO (standardized to Bioregistry
prefix so) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
SO:1861 |
1 | FYPO:0003251 |