oquat

epso

This document details the invalid local unique identifiers used in CURIEs for node, synonym, and definition cross-references in epso.

ICD10: International Classification of Diseases, 10th Revision

Overall, there were 6 invalid xrefs to external prefixed with ICD10 (standardized to Bioregistry prefix icd10) that did not match the standard pattern ^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\.[0-9]))?))$.

external_xref usages_count usages
ICD10:Q00.Q99 1 MONDO:0000839
ICD10:C00.D48 1 MONDO:0005070
ICD10:F00.F99 1 MONDO:0005084
ICD10:G47.41 1 MONDO:0016158
ICD10:G47.419 1 MONDO:0016158
ICD10:G47.24 1 MONDO:0019137

ICD9: International Classification of Diseases, 9th Revision

Overall, there were 2 invalid xrefs to external prefixed with ICD9 (standardized to Bioregistry prefix icd9) that did not match the standard pattern ^(\d\d\d|V\d\d|E[8-9]\d\d)(\.\d{1,2})?$.

external_xref usages_count usages
ICD9:140-239.99 1 MONDO:0005070
ICD9:290-299.99 1 MONDO:0005084

ICD9CM: International Classification of Diseases, 9th Revision, Clinical Modification

Overall, there were 10 invalid xrefs to external prefixed with ICD9CM (standardized to Bioregistry prefix icd9cm) that did not match the standard pattern ^([\dA-Z]\d{2}(\.\d{1,3}|))|(\d{2}(\.\d{1,2}|))$.

external_xref usages_count usages
ICD9CM:401-405.99 1 DOID:10763
ICD9CM:110-118.99 1 DOID:1564
ICD9CM:510-519.99 1 DOID:1579
ICD9CM:410-414.99 1 DOID:3393
ICD9CM:240-246.99 1 DOID:50
ICD9CM:042-042.99 1 DOID:526
ICD9CM:350-359.99 1 DOID:574
ICD9CM:430-438.99 1 DOID:6713
ICD9CM:520-579.99 1 DOID:77
ICD9CM:060-066.99 1 DOID:934

ICDO: International Classification of Diseases for Oncology

Overall, there were 3 invalid xrefs to external prefixed with ICDO (standardized to Bioregistry prefix icdo) that did not match the standard pattern ^[8-9]\d{3}(/[0-3])?$.

external_xref usages_count usages
ICDO:M9400/3 1 DOID:3069
ICDO:M9530/3 1 DOID:3565
ICDO:8000/6 1 MONDO:0024883

KEGG: Kyoto Encyclopedia of Genes and Genomes

Overall, there were 9 invalid xrefs to external prefixed with KEGG (standardized to Bioregistry prefix kegg) that did not match the standard pattern ^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$.

external_xref usages_count usages
KEGG:05321 1 DOID:0050589
KEGG:05034 1 DOID:0050741
KEGG:05143 1 DOID:10112
KEGG:05010 1 DOID:10652
KEGG:05310 1 DOID:2841
KEGG:05323 1 DOID:7148
KEGG:05322 1 DOID:9074
KEGG:04940 1 DOID:9744
KEGG:05214 1 MONDO:0015917

MESH: Medical Subject Headings

Overall, there were 18 invalid xrefs to external prefixed with MESH (standardized to Bioregistry prefix mesh) that did not match the standard pattern ^(C|D)\d{6,9}$.

external_xref usages_count usages
MESH:A08.186.211.577.750 1 UBERON:0000446
MESH:A08.186.211.730.885.213.270.700 1 UBERON:0000451
MESH:A08.186.211.730.885.213 1 UBERON:0000956
MESH:A08.186.211.730.885.213.270.548 1 UBERON:0001384
MESH:A08.186.211.730.885.213.863 1 UBERON:0001871
MESH:A08.186.211.730.885.213.670 1 UBERON:0001872
MESH:A08.186.211.577.090 1 UBERON:0001876
MESH:A08.186.211.730.385 1 UBERON:0001894
MESH:A08.186.211.730.385.826 1 UBERON:0001897
MESH:A08.186.211.577.482 1 UBERON:0001898
MESH:A08.186.211.132.659.237.816 1 UBERON:0001945
MESH:A08.186.211.132.659.237.364 1 UBERON:0001946
MESH:A08.186.211.730.885.213.571 1 UBERON:0002021
MESH:A08.186.211.577.699.573 1 UBERON:0002264
MESH:A08.186.211.730.885.362 1 UBERON:0002336
MESH:A08.186.211.577.710.225 1 UBERON:0002728
MESH:A08.186.211.730.885.213.670.675 1 UBERON:0008930
MESH:A08.186.211.730.885.213.270 1 UBERON:0016525

ncithesaurus: NCI Thesaurus

Overall, there were 5 invalid xrefs to external prefixed with ncithesaurus (standardized to Bioregistry prefix ncit) that did not match the standard pattern ^C\d+$.

external_xref usages_count usages
ncithesaurus:Parieto-occipital_Sulcus 1 UBERON:0002695
ncithesaurus:Middle_Frontal_Gyrus 1 UBERON:0002702
ncithesaurus:Inferior_Temporal_Gyrus 1 UBERON:0002751
ncithesaurus:Superior_Temporal_Gyrus 1 UBERON:0002769
ncithesaurus:Middle_Temporal_Gyrus 1 UBERON:0002771

NIFSTD: NIF Standard Ontology

Overall, there were 1 invalid xrefs to external prefixed with NIFSTD (standardized to Bioregistry prefix nif.std) that did not match the standard pattern ^BAMSC\d+$.

external_xref usages_count usages
NIFSTD:birnlex_12669 1 MONDO:0005084

OMIM: Online Mendelian Inheritance in Man

Overall, there were 11 invalid xrefs to external prefixed with OMIM (standardized to Bioregistry prefix omim) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
OMIM:PS102300 1 DOID:0050425
OMIM:PS601144 1 DOID:0050451
OMIM:PS266600 1 DOID:0050589
OMIM:PS604348 1 DOID:0050628
OMIM:PS308350 1 DOID:0050709
OMIM:PS600513 1 DOID:0060681
OMIM:PS191100 1 DOID:13515
OMIM:PS256730 1 DOID:14503
OMIM:PS192500 1 DOID:2843
OMIM:PS177900 1 DOID:8893
OMIM:PS254800 1 DOID:891

UMLS: Unified Medical Language System Concept Unique Identifier

Overall, there were 24 invalid xrefs to external prefixed with UMLS (standardized to Bioregistry prefix umls) that did not match the standard pattern ^C\d+$.

external_xref usages_count usages
UMLS:CN227588 1 MONDO:0000456
UMLS:CN232116 1 MONDO:0000839
UMLS:CN236628 1 MONDO:0005070
UMLS:CN240636 1 MONDO:0005084
UMLS:CN200685 1 MONDO:0007295
UMLS:CN203406 1 MONDO:0009945
UMLS:CN233170 1 MONDO:0014708
UMLS:CN199399 1 MONDO:0015346
UMLS:CN199955 1 MONDO:0015584
UMLS:CN200058 1 MONDO:0015648
UMLS:CN200064 1 MONDO:0015654
UMLS:CN200066 1 MONDO:0015657
UMLS:CN200068 1 MONDO:0015659
UMLS:CN200514 1 MONDO:0015916
UMLS:CN201945 1 MONDO:0016701
UMLS:CN227171 1 MONDO:0017657
UMLS:CN205631 1 MONDO:0019113
UMLS:CN205780 1 MONDO:0019197
UMLS:CN206266 1 MONDO:0019486
UMLS:CN206974 1 MONDO:0020070
UMLS:CN206975 1 MONDO:0020071
UMLS:CN206976 1 MONDO:0020072
UMLS:CN207128 1 MONDO:0020308
UMLS:CN207131 1 MONDO:0020310
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