This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in enm.
AGR: Agricultural Online AccessOverall, there were 6 invalid
xrefs to external prefixed with AGR (standardized to Bioregistry
prefix agricola) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
AGR:IND84086009 |
1 | CHEBI:136643 |
AGR:IND20386178 |
1 | CHEBI:136644 |
AGR:IND84086011 |
1 | CHEBI:136644 |
AGR:IND89021681 |
1 | CHEBI:136644 |
AGR:IND92003154 |
1 | CHEBI:136644 |
AGR:IND43789627 |
1 | CHEBI:136646 |
CARO: Common Anatomy Reference OntologyOverall, there were 2 invalid
xrefs to external prefixed with CARO (standardized to Bioregistry
prefix caro) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
CARO:mah |
2 | CL:0000000, CL:0000003 |
CAS: CAS Registry NumberOverall, there were 2 invalid
xrefs to external prefixed with CAS (standardized to Bioregistry
prefix cas) that
did not match the standard pattern ^\d{1,7}\-\d{2}\-\d$.
| external_xref | usages_count | usages |
|---|---|---|
CAS:1583915 |
1 | EFO:0022198 |
CAS:5466678 |
1 | EFO:0022199 |
doi: Digital Object IdentifierOverall, there were 1 invalid
xrefs to external prefixed with doi (standardized to Bioregistry
prefix doi) that
did not match the standard pattern ^10.\d{2,9}/.*$.
| external_xref | usages_count | usages |
|---|---|---|
doi: 10.1111/nmo.12871 |
1 | EFO:0011032 |
FAO: Fungal gross anatomyOverall, there were 27 invalid
xrefs to external prefixed with FAO (standardized to Bioregistry
prefix fao) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
FAO:http://fao.org/ag/agl/agll/wrb/doc/wrb2006final.pdf |
27 | ENVO:00002229, ENVO:00002231, ENVO:00002233, ENVO:00002234, ENVO:00002235, … |
FBtc: Flybase Cell LineOverall, there were 3 invalid
xrefs to external prefixed with FBtc (standardized to Bioregistry
prefix fbtc) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
FBtc:FBtc0000151 |
1 | EFO:0005743 |
FBtc:FBtc0000155 |
1 | EFO:0005744 |
FBtc:FBtc0000191 |
1 | EFO:0005745 |
Geonames: GeoNamesOverall, there were 4 invalid
xrefs to external prefixed with Geonames (standardized to Bioregistry
prefix geonames) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
Geonames:feature |
1 | ENVO:00000194 |
Geonames:T.TAL |
1 | ENVO:00000194 |
Geonames:T.RK |
1 | ENVO:00001995 |
Geonames:T.RKS |
1 | ENVO:00001995 |
Gmelin: Gmelins Handbuch der anorganischen ChemieOverall, there were 1 invalid
xrefs to external prefixed with Gmelin (standardized to Bioregistry
prefix gmelin) that
did not match the standard pattern ^[1-9][0-9]{3,6}$.
| external_xref | usages_count | usages |
|---|---|---|
Gmelin:485 |
1 | CHEBI:15379 |
HMDB: Human Metabolome DatabaseOverall, there were 85 invalid
xrefs to external prefixed with HMDB (standardized to Bioregistry
prefix hmdb) that
did not match the standard pattern ^HMDB\d+$.
| external_xref | usages_count | usages |
|---|---|---|
HMDB:0031682 |
1 | EFO:0803383 |
HMDB:0000958 |
1 | EFO:0803384 |
HMDB:0035590 |
1 | EFO:0803385 |
HMDB:0062477 |
1 | EFO:0803386 |
HMDB:0000634 |
1 | EFO:0803387 |
HMDB:0037285 |
1 | EFO:0803388 |
HMDB:0060745 |
1 | EFO:0803389 |
HMDB:0039972 |
1 | EFO:0803390 |
HMDB:0032802 |
1 | EFO:0803391 |
HMDB:0039133 |
1 | EFO:0803392 |
HMDB:0059993 |
1 | EFO:0803393 |
HMDB:0059784 |
1 | EFO:0803394 |
HMDB:0000472 |
1 | EFO:0803395 |
HMDB:0032822 |
1 | EFO:0803396 |
HMDB:0037146 |
1 | EFO:0803397 |
HMDB:0034022 |
1 | EFO:0803398 |
HMDB:0031885 |
1 | EFO:0803399 |
HMDB:0000446 |
1 | EFO:0803400 |
HMDB:0015554 |
1 | EFO:0803401 |
HMDB:0000194 |
1 | EFO:0803402 |
HMDB:0002212 |
1 | EFO:0803403 |
HMDB:0032173 |
1 | EFO:0803404 |
HMDB:0041188 |
1 | EFO:0803405 |
HMDB:0002322 |
1 | EFO:0803406 |
HMDB:0000567 |
1 | EFO:0803407 |
HMDB:0002035 |
1 | EFO:0803408 |
HMDB:0035701 |
1 | EFO:0803409 |
HMDB:0001413 |
1 | EFO:0803410 |
HMDB:0000905 |
1 | EFO:0803411 |
HMDB:0037173 |
1 | EFO:0803412 |
HMDB:0001370 |
1 | EFO:0803413 |
HMDB:0032216 |
1 | EFO:0803414 |
HMDB:0002226 |
1 | EFO:0803415 |
HMDB:0000954 |
1 | EFO:0803416 |
HMDB:0001254 |
1 | EFO:0803417 |
HMDB:0001514 |
1 | EFO:0803418 |
HMDB:0031089 |
1 | EFO:0803419 |
HMDB:0002259 |
1 | EFO:0803420 |
HMDB:0000130 |
1 | EFO:0803421 |
HMDB:0060039 |
1 | EFO:0803422 |
HMDB:0003447 |
1 | EFO:0803423 |
HMDB:0060001 |
1 | EFO:0803424 |
HMDB:0003335 |
1 | EFO:0803425 |
HMDB:0002250 |
1 | EFO:0803426 |
HMDB:0035372 |
1 | EFO:0803427 |
HMDB:0011482 |
1 | EFO:0803428 |
HMDB:0035068 |
1 | EFO:0803429 |
HMDB:0029598 |
1 | EFO:0803430 |
HMDB:0036583 |
1 | EFO:0803431 |
HMDB:0011561 |
1 | EFO:0803432 |
HMDB:0011567 |
1 | EFO:0803433 |
HMDB:0013250 |
1 | EFO:0803434 |
HMDB:0033442 |
1 | EFO:0803435 |
HMDB:0041537 |
1 | EFO:0803436 |
HMDB:0061051 |
1 | EFO:0803437 |
HMDB:0032740 |
1 | EFO:0803438 |
HMDB:0033438 |
1 | EFO:0803439 |
HMDB:0013287 |
1 | EFO:0803440 |
HMDB:0001132 |
1 | EFO:0803441 |
HMDB:0002059 |
1 | EFO:0803442 |
HMDB:0000225 |
1 | EFO:0803443 |
HMDB:0029239 |
1 | EFO:0803444 |
HMDB:0029803 |
1 | EFO:0803445 |
HMDB:0030527 |
1 | EFO:0803446 |
HMDB:0031149 |
1 | EFO:0803447 |
HMDB:0001565 |
1 | EFO:0803448 |
HMDB:0000272 |
1 | EFO:0803449 |
HMDB:0032472 |
1 | EFO:0803450 |
HMDB:0003072 |
1 | EFO:0803451 |
HMDB:0015436 |
1 | EFO:0803452 |
HMDB:0035802 |
1 | EFO:0803453 |
HMDB:0038140 |
1 | EFO:0803454 |
HMDB:0038585 |
1 | EFO:0803455 |
HMDB:0029890 |
1 | EFO:0803456 |
HMDB:0000996 |
1 | EFO:0803457 |
HMDB:0005792 |
1 | EFO:0803458 |
HMDB:0000757 |
1 | EFO:0803459 |
HMDB:0060412 |
1 | EFO:0803460 |
HMDB:0040824 |
1 | EFO:0803461 |
HMDB:0041785 |
1 | EFO:0803462 |
HMDB:0000881 |
1 | EFO:0803463 |
HMDB:0000208 |
1 | EFO:0803464 |
HMDB:0041919 |
1 | EFO:0803465 |
HMDB:0001852 |
1 | EFO:0803466 |
HMDB:0001934 |
1 | EFO:0803467 |
HPA: Human Protein Atlas tissue profile informationOverall, there were 1 invalid
xrefs to external prefixed with HPA (standardized to Bioregistry
prefix hpa) that
did not match the standard pattern ^ENSG\d{11}$.
| external_xref | usages_count | usages |
|---|---|---|
HPA:HPA |
1 | CL:1001603 |
ICD9: International Classification of Diseases, 9th RevisionOverall, there were 3 invalid
xrefs to external prefixed with ICD9 (standardized to Bioregistry
prefix icd9) that
did not match the standard pattern ^(\d\d\d|V\d\d|E[8-9]\d\d)(\.\d{1,2})?$.
| external_xref | usages_count | usages |
|---|---|---|
ICD9:89.52 |
1 | EFO:0004327 |
ICD9:V85-V85.99 |
1 | EFO:0004340 |
ICD9:V86-V86.99 |
1 | EFO:0005512 |
LANGUAL: Langua aLimentaria ThesaurusOverall, there were 1 invalid
xrefs to external prefixed with LANGUAL (standardized to Bioregistry
prefix langual) that
did not match the standard pattern ^B\d+$.
| external_xref | usages_count | usages |
|---|---|---|
LANGUAL:C0195 |
1 | FOODON:00001216 |
MA: Mouse adult gross anatomyOverall, there were 11 invalid
xrefs to external prefixed with MA (standardized to Bioregistry
prefix ma) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
MA:ma |
11 | ENVO:00000447, ENVO:00000873, ENVO:00001995, ENVO:00002006, ENVO:00002047, … |
MedDRA: Medical Dictionary for Regulatory Activities TerminologyOverall, there were 1 invalid
xrefs to external prefixed with MedDRA (standardized to Bioregistry
prefix meddra) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
MedDRA:1005MedDRA:1006 |
1 | EFO:0009248 |
MeSH: Medical Subject HeadingsOverall, there were 1 invalid
xrefs to external prefixed with MeSH (standardized to Bioregistry
prefix mesh) that
did not match the standard pattern ^(C|D)\d{6,9}$.
| external_xref | usages_count | usages |
|---|---|---|
MeSH:Q000401 |
1 | EFO:0004352 |
MGI: Mouse Genome InformaticsOverall, there were 1 invalid
xrefs to external prefixed with MGI (standardized to Bioregistry
prefix mgi) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
MGI:csmith |
1 | UBERON:0002530 |
NIFSTD: NIF Standard OntologyOverall, there were 6 invalid
xrefs to external prefixed with NIFSTD (standardized to Bioregistry
prefix nif.std) that
did not match the standard pattern ^BAMSC\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NIFSTD:birnlex_2052 |
1 | EFO:0000433 |
NIFSTD:birnlex_2023 |
1 | EFO:0000513 |
NIFSTD:birnlex_228 |
1 | EFO:0001272 |
NIFSTD:birnlex_681 |
1 | EFO:0001272 |
NIFSTD:sao279801585 |
1 | EFO:0001444 |
NIFSTD:birnlex_2117 |
1 | EFO:0002694 |
OBO_REL: Relation OntologyOverall, there were 1 invalid
xrefs to external prefixed with OBO_REL (standardized to Bioregistry
prefix ro) that
did not match the standard pattern ^(HOM)?\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
OBO_REL:has_part |
1 | PATO:0001555 |
PATO: Phenotype And Trait OntologyOverall, there were 7 invalid
xrefs to external prefixed with PATO (standardized to Bioregistry
prefix pato) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
PATO:GVG |
5 | PATO:0000911, PATO:0000912, PATO:0001596, PATO:0001663, PATO:0001664 |
PATO:DS |
1 | PATO:0002390 |
PATO:MAH |
1 | PATO:0002632 |
PMID: PubMedOverall, there were 6 invalid
xrefs to external prefixed with PMID (standardized to Bioregistry
prefix pubmed) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
PMID:PMC1531688 |
1 | EFO:0005725 |
PMID: 3897439 |
1 | EFO:0005910 |
PMID: 8788275 |
1 | EFO:0005913 |
PMID:27149984 |
1 | EFO:0007836 |
PMID: 31636452 |
1 | EFO:0010605 |
PMID: 32355309 |
1 | EFO:0010749 |
ReO: Reagent OntologyOverall, there were 2 invalid
xrefs to external prefixed with ReO (standardized to Bioregistry
prefix reo) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
ReO:mhb |
2 | CL:0000010, CL:0001034 |
SO: Sequence types and features ontologyOverall, there were 1 invalid
xrefs to external prefixed with SO (standardized to Bioregistry
prefix so) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
SO:cjm |
1 | uberon#spatially:disjoint:from |
UBERON: Uber Anatomy OntologyOverall, there were 1 invalid
xrefs to external prefixed with UBERON (standardized to Bioregistry
prefix uberon) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
UBERON:cjm |
1 | UBERON:0006925 |
WWF: World Wildlife Fund EcoregionOverall, there were 13 invalid
xrefs to external prefixed with WWF (standardized to Bioregistry
prefix wwf.ecoregion) that
did not match the standard pattern ^AT\d+$.
| external_xref | usages_count | usages |
|---|---|---|
WWF:Biome |
1 | ENVO:00000428 |
WWF:AA1310 |
1 | ENVO:01001569 |
WWF:AA1309 |
1 | ENVO:01001572 |
WWF:AA1308 |
1 | ENVO:01001573 |
WWF:AA1307 |
1 | ENVO:01001574 |
WWF:AA1301 |
1 | ENVO:01001575 |
WWF:AA1302 |
1 | ENVO:01001576 |
WWF:AA1303 |
1 | ENVO:01001577 |
WWF:AA1304 |
1 | ENVO:01001578 |
WWF:AA1305 |
1 | ENVO:01001579 |
WWF:AA1306 |
1 | ENVO:01001580 |
WWF:IM1304 |
1 | ENVO:01001627 |
WWF:IM1303 |
1 | ENVO:01001628 |