oquat

efo

This document details the invalid local unique identifiers used in CURIEs for node, synonym, and definition cross-references in efo. See the GitHub repository.

BTO: BRENDA Tissue Ontology

Overall, there were 2 invalid xrefs to external prefixed with BTO (standardized to Bioregistry prefix bto) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
BTO:0002522	1	EFO:0022408
BTO:0005715; PMID:7520026	1	EFO:0022452

CAS: CAS Registry Number

Overall, there were 2 invalid xrefs to external prefixed with CAS (standardized to Bioregistry prefix cas) that did not match the standard pattern ^\d{1,7}\-\d{2}\-\d$.

external_xref	usages_count	usages
CAS:1583915	1	EFO:0022198
CAS:5466678	1	EFO:0022199

DI: UniProt Diseases

Overall, there were 1 invalid xrefs to external prefixed with DI (standardized to Bioregistry prefix uniprot.disease) that did not match the standard pattern ^DI-\d{5}$.

external_xref	usages_count	usages
DI:00917	1	EFO:0010956

doi: Digital Object Identifier

Overall, there were 1 invalid xrefs to external prefixed with doi (standardized to Bioregistry prefix doi) that did not match the standard pattern ^10.\d{2,9}/.*$.

external_xref	usages_count	usages
doi: 10.1111/nmo.12871	1	EFO:0011032

FBdv: Drosophila development

Overall, there were 1 invalid xrefs to external prefixed with FBdv (standardized to Bioregistry prefix fbdv) that did not match the standard pattern ^\d{8}$.

external_xref	usages_count	usages
FBdv:0005333	1	EFO:0001323

FBtc: Flybase Cell Line

Overall, there were 3 invalid xrefs to external prefixed with FBtc (standardized to Bioregistry prefix fbtc) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
FBtc:FBtc0000151	1	EFO:0005743
FBtc:FBtc0000155	1	EFO:0005744
FBtc:FBtc0000191	1	EFO:0005745

HMDB: Human Metabolome Database

Overall, there were 85 invalid xrefs to external prefixed with HMDB (standardized to Bioregistry prefix hmdb) that did not match the standard pattern ^HMDB\d+$.

external_xref	usages_count	usages
HMDB:0031682	1	EFO:0803383
HMDB:0000958	1	EFO:0803384
HMDB:0035590	1	EFO:0803385
HMDB:0062477	1	EFO:0803386
HMDB:0000634	1	EFO:0803387
HMDB:0037285	1	EFO:0803388
HMDB:0060745	1	EFO:0803389
HMDB:0039972	1	EFO:0803390
HMDB:0032802	1	EFO:0803391
HMDB:0039133	1	EFO:0803392
HMDB:0059993	1	EFO:0803393
HMDB:0059784	1	EFO:0803394
HMDB:0000472	1	EFO:0803395
HMDB:0032822	1	EFO:0803396
HMDB:0037146	1	EFO:0803397
HMDB:0034022	1	EFO:0803398
HMDB:0031885	1	EFO:0803399
HMDB:0000446	1	EFO:0803400
HMDB:0015554	1	EFO:0803401
HMDB:0000194	1	EFO:0803402
HMDB:0002212	1	EFO:0803403
HMDB:0032173	1	EFO:0803404
HMDB:0041188	1	EFO:0803405
HMDB:0002322	1	EFO:0803406
HMDB:0000567	1	EFO:0803407
HMDB:0002035	1	EFO:0803408
HMDB:0035701	1	EFO:0803409
HMDB:0001413	1	EFO:0803410
HMDB:0000905	1	EFO:0803411
HMDB:0037173	1	EFO:0803412
HMDB:0001370	1	EFO:0803413
HMDB:0032216	1	EFO:0803414
HMDB:0002226	1	EFO:0803415
HMDB:0000954	1	EFO:0803416
HMDB:0001254	1	EFO:0803417
HMDB:0001514	1	EFO:0803418
HMDB:0031089	1	EFO:0803419
HMDB:0002259	1	EFO:0803420
HMDB:0000130	1	EFO:0803421
HMDB:0060039	1	EFO:0803422
HMDB:0003447	1	EFO:0803423
HMDB:0060001	1	EFO:0803424
HMDB:0003335	1	EFO:0803425
HMDB:0002250	1	EFO:0803426
HMDB:0035372	1	EFO:0803427
HMDB:0011482	1	EFO:0803428
HMDB:0035068	1	EFO:0803429
HMDB:0029598	1	EFO:0803430
HMDB:0036583	1	EFO:0803431
HMDB:0011561	1	EFO:0803432
HMDB:0011567	1	EFO:0803433
HMDB:0013250	1	EFO:0803434
HMDB:0033442	1	EFO:0803435
HMDB:0041537	1	EFO:0803436
HMDB:0061051	1	EFO:0803437
HMDB:0032740	1	EFO:0803438
HMDB:0033438	1	EFO:0803439
HMDB:0013287	1	EFO:0803440
HMDB:0001132	1	EFO:0803441
HMDB:0002059	1	EFO:0803442
HMDB:0000225	1	EFO:0803443
HMDB:0029239	1	EFO:0803444
HMDB:0029803	1	EFO:0803445
HMDB:0030527	1	EFO:0803446
HMDB:0031149	1	EFO:0803447
HMDB:0001565	1	EFO:0803448
HMDB:0000272	1	EFO:0803449
HMDB:0032472	1	EFO:0803450
HMDB:0003072	1	EFO:0803451
HMDB:0015436	1	EFO:0803452
HMDB:0035802	1	EFO:0803453
HMDB:0038140	1	EFO:0803454
HMDB:0038585	1	EFO:0803455
HMDB:0029890	1	EFO:0803456
HMDB:0000996	1	EFO:0803457
HMDB:0005792	1	EFO:0803458
HMDB:0000757	1	EFO:0803459
HMDB:0060412	1	EFO:0803460
HMDB:0040824	1	EFO:0803461
HMDB:0041785	1	EFO:0803462
HMDB:0000881	1	EFO:0803463
HMDB:0000208	1	EFO:0803464
HMDB:0041919	1	EFO:0803465
HMDB:0001852	1	EFO:0803466
HMDB:0001934	1	EFO:0803467

ICD10: International Classification of Diseases, 10th Revision

Overall, there were 50 invalid xrefs to external prefixed with ICD10 (standardized to Bioregistry prefix icd10) that did not match the standard pattern ^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\.[0-9]))?))$.

external_xref	usages_count	usages
ICD10:C91.10	1	EFO:0000095
ICD10:C91.00	1	EFO:0000220
ICD10:C91.90	1	EFO:0000220
ICD10:C92.00	1	EFO:0000222
ICD10:C92.40	1	EFO:0000224
ICD10:C83.70	1	EFO:0000309
ICD10:C95.90	1	EFO:0000565
ICD10:C00.D48	1	EFO:0000616
ICD10:H11.00	1	EFO:0000678
ICD10:H11.009	1	EFO:0000678
ICD10:J84.112	1	EFO:0000768
ICD10:C34.90	1	EFO:0001071
ICD10:C90.00	1	EFO:0001378
ICD10:D10.D36	1	EFO:0002422
ICD10:D75.81	1	EFO:0002430
ICD10:C94.20	1	EFO:0003025
ICD10:C90.10	1	EFO:0006475
ICD10:C90.30	1	EFO:0006738
ICD10:C94.30	1	EFO:0007359
ICD10:Q85.00	1	EFO:0008514
ICD10:R10.13	1	EFO:0008533
ICD10:351.8	1	EFO:0009380
ICD10:H53.30	1	EFO:0009535
ICD10:I85.01	1	EFO:0009545
ICD10:H00.H06	1	EFO:0009546
ICD10:N40.N51	1	EFO:0009555
ICD10:A69.22	1	EFO:0009562
ICD10:C95.00	1	EFO:1000068
ICD10:C93.30	1	EFO:1000309
ICD10:C64.C68	1	EFO:1000363
ICD10:D18.00	1	EFO:1000635
ICD10:C84.10	1	EFO:1000785
ICD10:A50.06	1	EFO:1000887
ICD10:C91.40	1	EFO:1000956
ICD10:A81.81	1	EFO:1001008
ICD10:D72.823	1	EFO:1001014
ICD10:C84.00	1	EFO:1001051
ICD10:C92.30	1	EFO:1001052
ICD10:A52.02	1	EFO:1001206
ICD10:K75.81	1	EFO:1001249
ICD10:J84.116	1	EFO:1001300
ICD10:H47.14	1	EFO:1001330
ICD10:C51.C58	1	EFO:1001331
ICD10:K76.81	1	EFO:1001346
ICD10:E75.24	1	EFO:1001380
ICD10:O43.01	1	EFO:1001794
ICD10:S52.27	1	EFO:1001811
ICD10:H05.12	1	EFO:1001819
ICD10:H11.15	1	EFO:1001824
ICD10:K68.12	1	EFO:1001832

ICD11: International Classification of Diseases, 11th Revision (Foundation Component)

Overall, there were 1 invalid xrefs to external prefixed with ICD11 (standardized to Bioregistry prefix icd11) that did not match the standard pattern ^[1-9]\d*$.

external_xref	usages_count	usages
ICD11:8C62	1	EFO:0020094

ICD9: International Classification of Diseases, 9th Revision

Overall, there were 43 invalid xrefs to external prefixed with ICD9 (standardized to Bioregistry prefix icd9) that did not match the standard pattern ^(\d\d\d|V\d\d|E[8-9]\d\d)(\.\d{1,2})?$.

external_xref	usages_count	usages
ICD9:520-579.99	2	EFO:0000405, EFO:0009431
ICD9:560-569.99	2	EFO:0000405, EFO:0009431
ICD9:570-579.99	2	EFO:0000405, EFO:0009431
ICD9:390-459.99	1	EFO:0000319
ICD9:420-429.99	1	EFO:0000319
ICD9:490-496.99	1	EFO:0000341
ICD9:401-405.99	1	EFO:0000537
ICD9:140-239.99	1	EFO:0000616
ICD9:290-299.99	1	EFO:0000677
ICD9:460-519.99	1	EFO:0000684
ICD9:500-508.99	1	EFO:0000684
ICD9:510-519.99	1	EFO:0000684
ICD9:060-066.99	1	EFO:0000763
ICD9:042-042.99	1	EFO:0000764
ICD9:010-018.99	1	EFO:0000774
ICD9:290-319.99	1	EFO:0001335
ICD9:300-316.99	1	EFO:0001335
ICD9:410-414.99	1	EFO:0001645
ICD9:210-229.99	1	EFO:0002422
ICD9:430-438.99	1	EFO:0003763
ICD9:338-338.99	1	EFO:0003843
ICD9:317-319.99	1	EFO:0003847
ICD9:64.0	1	EFO:0003953
ICD9:89.52	1	EFO:0004327
ICD9:V85-V85.99	1	EFO:0004340
ICD9:V86-V86.99	1	EFO:0005512
ICD9:280-289.99	1	EFO:0005803
ICD9:540-543.99	1	EFO:0007149
ICD9:350-359.99	1	EFO:0009387
ICD9:610-612.99	1	EFO:0009483
ICD9:600-608.99	1	EFO:0009555
ICD9:93.90	1	EFO:0010719
ICD9:96.7	1	EFO:0010720
ICD9:33.5	1	EFO:0010721
ICD9:08-16	1	EFO:0010722
ICD9:240-246.99	1	EFO:1000627
ICD9:390-392.99	1	EFO:1001160
ICD9:120-129.99	1	EFO:1001342
ICD9:614-616.99	1	EFO:1001388
ICD9:209-209.99	1	EFO:1001901

ICD9CM: International Classification of Diseases, 9th Revision, Clinical Modification

Overall, there were 2 invalid xrefs to external prefixed with ICD9CM (standardized to Bioregistry prefix icd9cm) that did not match the standard pattern ^([\dA-Z]\d{2}(\.\d{1,3}|))|(\d{2}(\.\d{1,2}|))$.

external_xref	usages_count	usages
ICD9CM:280-289.99	1	EFO:0005803
ICD9CM:390-392.99	1	EFO:1001160

ICDO: International Classification of Diseases for Oncology

Overall, there were 5 invalid xrefs to external prefixed with ICDO (standardized to Bioregistry prefix icdo) that did not match the standard pattern ^[8-9]\d{3}(/[0-3])?$.

external_xref	usages_count	usages
ICDO:0000/0	2	EFO:1000159, EFO:1000508
ICDO:M9861/3	1	EFO:0000330
ICDO:981-983	1	EFO:0004289
ICDO:8000/6	1	EFO:0009709

IDO: Infectious Disease Ontology

Overall, there were 1 invalid xrefs to external prefixed with IDO (standardized to Bioregistry prefix ido) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
IDO:IDO_0000436	1	EFO:0005741

JAX: Jackson Laboratories Mouse Strain

Overall, there were 1 invalid xrefs to external prefixed with JAX (standardized to Bioregistry prefix jaxmice) that did not match the standard pattern ^\d{6}$.

external_xref	usages_count	usages
JAX:8075	1	EFO:0001341

KEGG: Kyoto Encyclopedia of Genes and Genomes

Overall, there were 7 invalid xrefs to external prefixed with KEGG (standardized to Bioregistry prefix kegg) that did not match the standard pattern ^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$.

external_xref	usages_count	usages
KEGG:05221	1	EFO:0000222
KEGG:05220	1	EFO:0000339
KEGG:05222	1	EFO:0000702
KEGG:05218	1	EFO:0000756
KEGG:05215	1	EFO:0001663
KEGG:05223	1	EFO:0003060
KEGG:05210	1	EFO:0005842

MAXO: Medical Action Ontology

Overall, there were 1 invalid xrefs to external prefixed with MAXO (standardized to Bioregistry prefix maxo) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
MAXO:748	1	EFO:0022844

MedDRA: Medical Dictionary for Regulatory Activities Terminology

Overall, there were 9 invalid xrefs to external prefixed with MedDRA (standardized to Bioregistry prefix meddra) that did not match the standard pattern ^\d+$.

external_xref	usages_count	usages
MedDRA:10020MedDRA:100	1	EFO:0003964
MedDRA:100MedDRA:10022	1	EFO:0007213
MedDRA:10045MedDRA:100	1	EFO:0007529
MedDRA:1005MedDRA:1006	1	EFO:0009248
MedDRA:1000MedDRA:1002	1	EFO:0009657
MedDRA:C1535926	1	EFO:0010642
MedDRA:1001MedDRA:1007	1	EFO:1000879
MedDRA:1001MedDRA:1009	1	EFO:1000879
MedDRA:10049MedDRA:100	1	EFO:1001835

MedGen: Human Medical Genetics

Overall, there were 6 invalid xrefs to external prefixed with MedGen (standardized to Bioregistry prefix medgen) that did not match the standard pattern ^(CN)?\d{2,7}$.

external_xref	usages_count	usages
MedGen:C1535926	1	EFO:0010642
MedGen:C4748701	1	EFO:0010643
MedGen:C4288261	1	EFO:0010647
MedGen:C1864399	1	EFO:0010956
MedGen:C1333600	1	EFO:0022911
MedGen:C3502105	1	EFO:0022913

Medgen: Human Medical Genetics

Overall, there were 3 invalid xrefs to external prefixed with Medgen (standardized to Bioregistry prefix medgen) that did not match the standard pattern ^(CN)?\d{2,7}$.

external_xref	usages_count	usages
Medgen:C0339526	1	EFO:0020026
Medgen:C3887501	1	EFO:0020027
Medgen:C3150597	1	EFO:0020031

MEDGEN: Human Medical Genetics

Overall, there were 1 invalid xrefs to external prefixed with MEDGEN (standardized to Bioregistry prefix medgen) that did not match the standard pattern ^(CN)?\d{2,7}$.

external_xref	usages_count	usages
MEDGEN:C0002768	1	EFO:0022837

MedlinePlus: MedlinePlus Health Topics

Overall, there were 1 invalid xrefs to external prefixed with MedlinePlus (standardized to Bioregistry prefix medlineplus) that did not match the standard pattern ^\d+$.

external_xref	usages_count	usages
MedlinePlus: 001381	1	EFO:0000777

MESH: Medical Subject Headings

Overall, there were 11 invalid xrefs to external prefixed with MESH (standardized to Bioregistry prefix mesh) that did not match the standard pattern ^(C|D|M)\d{6,9}$.

external_xref	usages_count	usages
MESH:NoID	3	EFO:0007233, EFO:0007422, EFO:0007441
MESH:D014253-modified	1	EFO:0007523
MESH:D014323-modified	1	EFO:0007526
MESH:DO16518	1	EFO:0004122
MESH:Q000401	1	EFO:0004352
MESH:68062025	1	EFO:0010581
MESH:Q000633	1	EFO:0011061
MESH:130014	1	EFO:0022194
MESH:DO14076	1	EFO:1001216

MFO: Medaka fish anatomy and development

Overall, there were 1 invalid xrefs to external prefixed with MFO (standardized to Bioregistry prefix mfo) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
MFO:000290	1	EFO:0000791

MONDO: Mondo Disease Ontology

Overall, there were 1,717 invalid xrefs to external prefixed with MONDO (standardized to Bioregistry prefix mondo) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
MONDO:patterns/location	619	EFO:0000178, EFO:0000181, EFO:0000182, EFO:0000191, EFO:0000199, …
MONDO:design_pattern	208	EFO:0000191, EFO:0000319, EFO:0000330, EFO:0000405, EFO:0000405, …
MONDO:patterns/specific_infectious_disease_by_agent	169	EFO:0000650, EFO:0000694, EFO:0000763, EFO:0000764, EFO:0000769, …
MONDO:ambiguous	157	EFO:0000217, EFO:0000220, EFO:0000248, EFO:0000275, EFO:0000284, …
MONDO:patterns/location_top	110	EFO:0000319, EFO:0000405, EFO:0000512, EFO:0000540, EFO:0000618, …
MONDO:Lexical	79	EFO:0000095, EFO:0000174, EFO:0000181, EFO:0000198, EFO:0000222, …
MONDO:patterns/neoplasm	67	EFO:0000294, EFO:0002431, EFO:0002626, EFO:0003769, EFO:0003817, …
MONDO:patterns/inflammatory_disease_by_site	61	EFO:0000217, EFO:0000278, EFO:0000465, EFO:0000557, EFO:0000649, …
MONDO:patterns/carcinoma	50	EFO:0000178, EFO:0000182, EFO:0000216, EFO:0000305, EFO:0000501, …
MONDO:patterns/cancer	44	EFO:0000178, EFO:0000326, EFO:0005088, EFO:0005553, EFO:0005557, …
MONDO:patterns/chronic	16	EFO:0000337, EFO:0000339, EFO:0000341, EFO:0000342, EFO:0002428, …
MONDO:LexicalVariant	12	EFO:0000384, EFO:0003780, EFO:0005625, EFO:0005627, EFO:0005629, …
MONDO:patterns/disease_series_by_gene	11	EFO:0009071, EFO:0009301, EFO:1001333, EFO:1001501, EFO:1001501, …
MONDO:patterns/infectious_disease_by_agent	11	EFO:0000763, EFO:0004249, EFO:0007128, EFO:0007146, EFO:0007173, …
MONDO:patterns/sarcoma	10	EFO:0000569, EFO:0000637, EFO:0002914, EFO:0002920, EFO:0003968, …
MONDO:patterns/malignant	10	EFO:0005567, EFO:0008545, EFO:1000124, EFO:1000348, EFO:1000352, …
MONDO:patterns/hereditary	9	EFO:0000508, EFO:0001356, EFO:0001356, EFO:0002945, EFO:0002945, …
MONDO:patterns/basis_in_disruption_of_process	8	EFO:0000589, EFO:0000677, EFO:0000677, EFO:0005269, EFO:0008499, …
MONDO:patterns/neuroendocrine_neoplasm_grade1	8	EFO:1000092, EFO:1000094, EFO:1000154, EFO:1000188, EFO:1000195, …
MONDO:patterns/acute	7	EFO:0000220, EFO:0000221, EFO:0000222, EFO:0002497, EFO:0008583, …
MONDO:patterns/allergic_form_of_disease	5	EFO:0000274, EFO:0005854, EFO:0007141, EFO:1000668, EFO:1000669
MONDO:patterns/benign	5	EFO:0002422, EFO:1000028, EFO:1000106, EFO:1000108, EFO:1000485
MONDO:patterns/environmental_stimulus	5	EFO:0004712, EFO:0007153, EFO:1000814, EFO:1000851, EFO:1001890
MONDO:patterns/acquired	4	EFO:1000639, EFO:1000639, EFO:1000663, EFO:1000691
MONDO:patterns/congenital	4	EFO:0007217, EFO:0007218, EFO:0007219, EFO:0007220
MONDO:patterns/specific_inflammatory_disease_by_site	3	EFO:0005627, EFO:0005629, EFO:0005751
MONDO:cjm	3	EFO:0000182, EFO:0000574, EFO:0004243
MONDO:patterns/childhood	3	EFO:0000330, EFO:0004594, EFO:0009052
MONDO:patterns/x_linked	2	EFO:0009064, EFO:0009064
MONDO:patterns/autosomal_recessive	2	EFO:1000017, EFO:1000017
MONDO:patterns/autosomal_dominant	2	EFO:1001496, EFO:1001496
MONDO:DesignPattern	2	EFO:0000294, EFO:1000071
MONDO:patterns/carcinoma_in_situ	2	EFO:0000432, EFO:1000283
MONDO:patterns/neuroendocrine_neoplasm	2	EFO:0005220, EFO:1001928
MONDO:patterns/inborn_metabolic	2	EFO:0005596, EFO:0007287
MONDO:patterns/allergy	2	EFO:0009482, EFO:1001890
MONDO:patterns/adult	2	EFO:1001933, EFO:1001935
MONDO:design_patterns	1	EFO:0000182

NCIm: NCI Metathesaurus

Overall, there were 1 invalid xrefs to external prefixed with NCIm (standardized to Bioregistry prefix ncim) that did not match the standard pattern ^C\d+$.

external_xref	usages_count	usages
NCIm:CL455363	1	EFO:0003918

NCIT: NCI Thesaurus

Overall, there were 1 invalid xrefs to external prefixed with NCIT (standardized to Bioregistry prefix ncit) that did not match the standard pattern ^[CRPA]\d+$.

external_xref	usages_count	usages
NCIT:C128346-modified	1	EFO:0004720

NCIt: NCI Thesaurus

Overall, there were 1 invalid xrefs to external prefixed with NCIt (standardized to Bioregistry prefix ncit) that did not match the standard pattern ^[CRPA]\d+$.

external_xref	usages_count	usages
NCIt: C12511	1	EFO:0001394

NIFSTD: NIF Standard Ontology

Overall, there were 100 invalid xrefs to external prefixed with NIFSTD (standardized to Bioregistry prefix nif.std) that did not match the standard pattern ^BAMSC\d+$.

external_xref	usages_count	usages
NIFSTD:birnlex_2117	2	EFO:0002607, EFO:0002694
NIFSTD:birnlex_734	1	EFO:0000107
NIFSTD:birnlex_1581	1	EFO:0000230
NIFSTD:birnlex_2092	1	EFO:0000249
NIFSTD:birnlex_1241	1	EFO:0000252
NIFSTD:birnlex_12566	1	EFO:0000253
NIFSTD:birnlex_2110	1	EFO:0000264
NIFSTD:birnlex_12754	1	EFO:0000289
NIFSTD:birnlex_796	1	EFO:0000302
NIFSTD:birnlex_406	1	EFO:0000311
NIFSTD:birnlex_1489	1	EFO:0000327
NIFSTD:birnlex_934	1	EFO:0000343
NIFSTD:birnlex_1190	1	EFO:0000357
NIFSTD:birnlex_1672	1	EFO:0000381
NIFSTD:nlx_anat_20090201	1	EFO:0000381
NIFSTD:birnlex_1494	1	EFO:0000383
NIFSTD:birnlex_2052	1	EFO:0000433
NIFSTD:birnlex_12718	1	EFO:0000474
NIFSTD:birnlex_12617	1	EFO:0000500
NIFSTD:birnlex_12633	1	EFO:0000502
NIFSTD:birnlex_2023	1	EFO:0000513
NIFSTD:birnlex_12500	1	EFO:0000533
NIFSTD:birnlex_174	1	EFO:0000598
NIFSTD:birnlex_557	1	EFO:0000600
NIFSTD:birnlex_206	1	EFO:0000602
NIFSTD:birnlex_398	1	EFO:0000605
NIFSTD:birnlex_393	1	EFO:0000606
NIFSTD:birnlex_12631	1	EFO:0000621
NIFSTD:birnlex_12604	1	EFO:0000622
NIFSTD:birnlex_2087	1	EFO:0000651
NIFSTD:birnlex_12606	1	EFO:0000658
NIFSTD:birnlex_12669	1	EFO:0000677
NIFSTD:birnlex_203	1	EFO:0000679
NIFSTD:birnlex_2104	1	EFO:0000692
NIFSTD:birnlex_12603	1	EFO:0000693
NIFSTD:birnlex_12783	1	EFO:0000712
NIFSTD:birnlex_12733	1	EFO:0000773
NIFSTD:birnlex_844	1	EFO:0000802
NIFSTD:birnlex_1062	1	EFO:0000826
NIFSTD:birnlex_1169	1	EFO:0000827
NIFSTD:birnlex_1153	1	EFO:0000832
NIFSTD:birnlex_1166	1	EFO:0000895
NIFSTD:birnlex_2596	1	EFO:0000900
NIFSTD:birnlex_826	1	EFO:0000904
NIFSTD:birnlex_1234	1	EFO:0000905
NIFSTD:birnlex_1373	1	EFO:0000907
NIFSTD:birnlex_1099	1	EFO:0000908
NIFSTD:birnlex_1509	1	EFO:0000909
NIFSTD:birnlex_954	1	EFO:0000910
NIFSTD:birnlex_1503	1	EFO:0000911
NIFSTD:birnlex_1115	1	EFO:0000912
NIFSTD:birnlex_928	1	EFO:0000913
NIFSTD:nlx_anat_20090601	1	EFO:0000913
NIFSTD:birnlex_1710	1	EFO:0000918
NIFSTD:birnlex_1667	1	EFO:0000919
NIFSTD:birnlex_942	1	EFO:0000923
NIFSTD:birnlex_957	1	EFO:0000924
NIFSTD:birnlex_1230	1	EFO:0000964
NIFSTD:sao1078172392	1	EFO:0000966
NIFSTD:sao1642908940	1	EFO:0000967
NIFSTD:nlx_dys_20090502	1	EFO:0001064
NIFSTD:nlx_dys_20090302	1	EFO:0001073
NIFSTD:nlx_dys_20090303	1	EFO:0001074
NIFSTD:birnlex_12770	1	EFO:0001079
NIFSTD:birnlex_228	1	EFO:0001272
NIFSTD:birnlex_681	1	EFO:0001272
NIFSTD:birnlex_577	1	EFO:0001327
NIFSTD:birnlex_152	1	EFO:0001331
NIFSTD:birnlex_106	1	EFO:0001332
NIFSTD:birnlex_320	1	EFO:0001342
NIFSTD:birnlex_214	1	EFO:0001352
NIFSTD:birnlex_266	1	EFO:0001352
NIFSTD:birnlex_438	1	EFO:0001355
NIFSTD:birnlex_695	1	EFO:0001355
NIFSTD:birnlex_12679	1	EFO:0001358
NIFSTD:birnlex_12812	1	EFO:0001365
NIFSTD:birnlex_1178	1	EFO:0001366
NIFSTD:sao1145756102	1	EFO:0001369
NIFSTD:birnlex_429	1	EFO:0001372
NIFSTD:birnlex_699	1	EFO:0001372
NIFSTD:birnlex_733	1	EFO:0001394
NIFSTD:sao279801585	1	EFO:0001444
NIFSTD:birnlex_2525	1	EFO:0001644
NIFSTD:sao2146594471	1	EFO:0001651
NIFSTD:sao1703115805	1	EFO:0001653
NIFSTD:sao-282380853	1	EFO:0001654
NIFSTD:birnlex_2391	1	EFO:0001715
NIFSTD:sao196989303	1	EFO:0001715
NIFSTD:birnlex_2085	1	EFO:0001738
NIFSTD:birnlex_3016	1	EFO:0001799
NIFSTD:birnlex_982	1	EFO:0001919
NIFSTD:birnlex_1263	1	EFO:0001961
NIFSTD:birnlex_1565	1	EFO:0001962
NIFSTD:birnlex_1202	1	EFO:0001987
NIFSTD:birnlex_12573	1	EFO:0002505
NIFSTD:birnlex_2098	1	EFO:0002508
NIFSTD:birnlex_12697	1	EFO:0002512
NIFSTD:birnlex_484	1	EFO:0002543
NIFSTD:birnlex_12648	1	EFO:0002624

OBI: Ontology for Biomedical Investigations

Overall, there were 1 invalid xrefs to external prefixed with OBI (standardized to Bioregistry prefix obi) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
OBI:OBI_1110054	1	EFO:0005140

ORDO: Orphanet Rare Disease Ontology

Overall, there were 39 invalid xrefs to external prefixed with ORDO (standardized to Bioregistry prefix orphanet.ordo) that did not match the standard pattern ^C?\d+$.

external_xref	usages_count	usages
ORDO:Orphanet_71273	2	EFO:1001838, EFO:1001915
ORDO:Orphanet_803	1	EFO:0000253
ORDO:Orphanet_217569	1	EFO:0000538
ORDO:Orphanet_3386	1	EFO:0008559
ORDO:Orphanet_454710	1	EFO:0008597
ORDO:Orphanet_79481	1	EFO:0008601
ORDO:Orphanet_63455	1	EFO:0008602
ORDO:Orphanet_79480	1	EFO:0008603
ORDO:Orphanet_46486	1	EFO:1000680
ORDO:Orphanet_107	1	EFO:1001251
ORDO:Orphanet_1457	1	EFO:1001267
ORDO:Orphanet_36205	1	EFO:1001293
ORDO:Orphanet_65279	1	EFO:1001294
ORDO:Orphanet_58220	1	EFO:1001295
ORDO:Orphanet_86864	1	EFO:1001341
ORDO:Orphanet_33543	1	EFO:1001354
ORDO:Orphanet_158011	1	EFO:1001376
ORDO:Orphanet_1183	1	EFO:1001383
ORDO:Orphanet_3392	1	EFO:1001444
ORDO:Orphanet_879	1	EFO:1001445
ORDO:Orphanet_662	1	EFO:1001452
ORDO:Orphanet_168956	1	EFO:1001467
ORDO:Orphanet_217720	1	EFO:1001473
ORDO:Orphanet_188	1	EFO:1001477
ORDO:Orphanet_963	1	EFO:1001485
ORDO:Orphanet_228119	1	EFO:1001795
ORDO:Orphanet_158061	1	EFO:1001806
ORDO:Orphanet_306682	1	EFO:1001808
ORDO:Orphanet_221074	1	EFO:1001809
ORDO:Orphanet_137617	1	EFO:1001814
ORDO:Orphanet_157835	1	EFO:1001822
ORDO:Orphanet_43116	1	EFO:1001842
ORDO:Orphanet_36236	1	EFO:1001849
ORDO:Orphanet_838	1	EFO:1001856
ORDO:Orphanet_3287	1	EFO:1001857
ORDO:Orphanet_83467	1	EFO:1001897
ORDO:Orphanet_85414	1	EFO:1001999
ORDO:Orphanet_66529	1	EFO:1002000

PMID: PubMed

Overall, there were 18 invalid xrefs to external prefixed with PMID (standardized to Bioregistry prefix pubmed) that did not match the standard pattern ^\d+$.

external_xref	usages_count	usages
PMID: 26629530	2	EFO:0022705, EFO:0022706
PMID: 11246871	1	EFO:0002540
PMID:PMC1531688	1	EFO:0005725
PMID: 3897439	1	EFO:0005910
PMID: 8788275	1	EFO:0005913
PMID:27149984	1	EFO:0007836
PMID: 31636452	1	EFO:0010605
PMID:25167691	1	EFO:0010695
PMID: 32355309	1	EFO:0010749
PMID: 19881539	1	EFO:0022445
PMID: 25680274	1	EFO:0022593
PMID: 10764661	1	EFO:0022696
PMID: 16395697	1	EFO:0022699
PMID: 11479214	1	EFO:0022701
PMID: 19466639	1	EFO:0022708
PMID: 8394948	1	EFO:0022718
PMID: 16537381	1	EFO:0022786

PRO: Protein Ontology

Overall, there were 1 invalid xrefs to external prefixed with PRO (standardized to Bioregistry prefix pr) that did not match the standard pattern ^(?:\d{9}|[OPQ][0-9][A-Z0-9]{3}[0-9](?:-\d+)?|[A-NR-Z][0-9](?:[A-Z][A-Z0-9]{2}[0-9]){1,2}(?:-\d+)?)$.

external_xref	usages_count	usages
PRO:DAN	1	EFO:0003021

Reactome: Reactome

Overall, there were 3 invalid xrefs to external prefixed with Reactome (standardized to Bioregistry prefix reactome) that did not match the standard pattern ^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$.

external_xref	usages_count	usages
Reactome:Q9HB96	1	EFO:0009914
Reactome:Q9ULP9	1	EFO:0009915
Reactome:Q9NP58	1	EFO:0009916

SNOMEDCT: SNOMED CT (International Edition)

Overall, there were 3 invalid xrefs to external prefixed with SNOMEDCT (standardized to Bioregistry prefix snomedct) that did not match the standard pattern ^(\w+)?\d+$.

external_xref	usages_count	usages
SNOMEDCT: 266417001	1	EFO:0010688
SNOMEDCT:88039007	1	EFO:0010721
SNOMEDCT: 274897005	1	EFO:1001841

TADS: Tick Anatomy Ontology

Overall, there were 1 invalid xrefs to external prefixed with TADS (standardized to Bioregistry prefix tads) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
TADS:000315	1	EFO:0000935

TGMA: Mosquito gross anatomy ontology

Overall, there were 1 invalid xrefs to external prefixed with TGMA (standardized to Bioregistry prefix tgma) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
TGMA:000136	1	EFO:0000965

UMLS: Unified Medical Language System Concept Unique Identifier

Overall, there were 81 invalid xrefs to external prefixed with UMLS (standardized to Bioregistry prefix umls) that did not match the standard pattern ^C\d+$.

external_xref	usages_count	usages
UMLS:CN242113	1	EFO:0000350
UMLS:CN227279	1	EFO:0000519
UMLS:CN236628	1	EFO:0000616
UMLS:CN205129	1	EFO:0000640
UMLS:CN244903	1	EFO:0000702
UMLS:CN971653	1	EFO:0000756
UMLS:CN204600	1	EFO:0005717
UMLS:CN237663	1	EFO:0005783
UMLS:CN205033	1	EFO:0006462
UMLS:CL520437	1	EFO:0008614
UMLS:CN202862	1	EFO:0009068
UMLS:CN240512	1	EFO:0009068
UMLS:CN237671	1	EFO:0009553
UMLS:CN072436	1	EFO:0009907
UMLS:CN229293	1	EFO:0700025
UMLS:CN226594	1	EFO:0700026
UMLS:CN228909	1	EFO:0700027
UMLS:CN197468	1	EFO:0700028
UMLS:CN197488	1	EFO:0700029
UMLS:CN226645	1	EFO:0700030
UMLS:CN228927	1	EFO:0700031
UMLS:CN228928	1	EFO:0700032
UMLS:CN228932	1	EFO:0700033
UMLS:CN228933	1	EFO:0700034
UMLS:CN199609	1	EFO:0700036
UMLS:CN226709	1	EFO:0700037
UMLS:CN200175	1	EFO:0700038
UMLS:CN226739	1	EFO:0700040
UMLS:CN229044	1	EFO:0700051
UMLS:CN201790	1	EFO:0700057
UMLS:CN201945	1	EFO:0700058
UMLS:CN201974	1	EFO:0700059
UMLS:CN227033	1	EFO:0700060
UMLS:CN202399	1	EFO:0700061
UMLS:CN227073	1	EFO:0700062
UMLS:CN227096	1	EFO:0700065
UMLS:CN202572	1	EFO:0700066
UMLS:CN202602	1	EFO:0700067
UMLS:CN202699	1	EFO:0700068
UMLS:CN202725	1	EFO:0700069
UMLS:CN203384	1	EFO:0700071
UMLS:CN204041	1	EFO:0700074
UMLS:CN437676	1	EFO:0700075
UMLS:CN204780	1	EFO:0700081
UMLS:CN204808	1	EFO:0700082
UMLS:CN225947	1	EFO:0700088
UMLS:CN237587	1	EFO:0700090
UMLS:CN237592	1	EFO:0700091
UMLS:CN242171	1	EFO:0700093
UMLS:CN776854	1	EFO:0700096
UMLS:CN776824	1	EFO:0700097
UMLS:CN205687	1	EFO:0700102
UMLS:CN205736	1	EFO:0700103
UMLS:CN227591	1	EFO:0700104
UMLS:CN206266	1	EFO:0700105
UMLS:CN206304	1	EFO:0700106
UMLS:CN227645	1	EFO:0700107
UMLS:CN227674	1	EFO:0700110
UMLS:CN206692	1	EFO:0700113
UMLS:CN120488	1	EFO:0700119
UMLS:CN227798	1	EFO:0700120
UMLS:CN227834	1	EFO:0700123
UMLS:CN207246	1	EFO:0700129
UMLS:CN043667	1	EFO:0700137
UMLS:CN226945	1	EFO:1000015
UMLS:CN203416	1	EFO:1000027
UMLS:CN201941	1	EFO:1000028
UMLS:CN205034	1	EFO:1000042
UMLS:CL343552	1	EFO:1000056
UMLS:CN202866	1	EFO:1000129
UMLS:CN201056	1	EFO:1000242
UMLS:CN237470	1	EFO:1000278
UMLS:CN206982	1	EFO:1000297
UMLS:CN203938	1	EFO:1000314
UMLS:CN202288	1	EFO:1000395
UMLS:CN204702	1	EFO:1000570
UMLS:CN207411	1	EFO:1000576
UMLS:CN237515	1	EFO:1001928
UMLS:CN221574	1	EFO:1001951
UMLS:CN204398	1	EFO:1001968
UMLS:CN207484	1	EFO:1002008

Wikipedia: Wikipedia

Overall, there were 2 invalid xrefs to external prefixed with Wikipedia (standardized to Bioregistry prefix wikipedia.en) that did not match the standard pattern ^\S+$.

external_xref	usages_count	usages
Wikipedia:Single cell sequencing	2	EFO:0008913, EFO:0008913

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