oquat

efo

This document details the invalid local unique identifiers used in CURIEs for node, synonym, and definition cross-references in efo. See the GitHub repository.

BTO: BRENDA Tissue Ontology

Overall, there were 2 invalid xrefs to external prefixed with BTO (standardized to Bioregistry prefix bto) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
BTO:0002522 1 EFO:0022408
BTO:0005715; PMID:7520026 1 EFO:0022452

CAS: CAS Registry Number

Overall, there were 2 invalid xrefs to external prefixed with CAS (standardized to Bioregistry prefix cas) that did not match the standard pattern ^\d{1,7}\-\d{2}\-\d$.

external_xref usages_count usages
CAS:1583915 1 EFO:0022198
CAS:5466678 1 EFO:0022199

DI: UniProt Diseases

Overall, there were 1 invalid xrefs to external prefixed with DI (standardized to Bioregistry prefix uniprot.disease) that did not match the standard pattern ^DI-\d{5}$.

external_xref usages_count usages
DI:00917 1 EFO:0010956

doi: Digital Object Identifier

Overall, there were 1 invalid xrefs to external prefixed with doi (standardized to Bioregistry prefix doi) that did not match the standard pattern ^10.\d{2,9}/.*$.

external_xref usages_count usages
doi: 10.1111/nmo.12871 1 EFO:0011032

FBdv: Drosophila development

Overall, there were 1 invalid xrefs to external prefixed with FBdv (standardized to Bioregistry prefix fbdv) that did not match the standard pattern ^\d{8}$.

external_xref usages_count usages
FBdv:0005333 1 EFO:0001323

FBtc: Flybase Cell Line

Overall, there were 3 invalid xrefs to external prefixed with FBtc (standardized to Bioregistry prefix fbtc) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
FBtc:FBtc0000151 1 EFO:0005743
FBtc:FBtc0000155 1 EFO:0005744
FBtc:FBtc0000191 1 EFO:0005745

HMDB: Human Metabolome Database

Overall, there were 85 invalid xrefs to external prefixed with HMDB (standardized to Bioregistry prefix hmdb) that did not match the standard pattern ^HMDB\d+$.

external_xref usages_count usages
HMDB:0031682 1 EFO:0803383
HMDB:0000958 1 EFO:0803384
HMDB:0035590 1 EFO:0803385
HMDB:0062477 1 EFO:0803386
HMDB:0000634 1 EFO:0803387
HMDB:0037285 1 EFO:0803388
HMDB:0060745 1 EFO:0803389
HMDB:0039972 1 EFO:0803390
HMDB:0032802 1 EFO:0803391
HMDB:0039133 1 EFO:0803392
HMDB:0059993 1 EFO:0803393
HMDB:0059784 1 EFO:0803394
HMDB:0000472 1 EFO:0803395
HMDB:0032822 1 EFO:0803396
HMDB:0037146 1 EFO:0803397
HMDB:0034022 1 EFO:0803398
HMDB:0031885 1 EFO:0803399
HMDB:0000446 1 EFO:0803400
HMDB:0015554 1 EFO:0803401
HMDB:0000194 1 EFO:0803402
HMDB:0002212 1 EFO:0803403
HMDB:0032173 1 EFO:0803404
HMDB:0041188 1 EFO:0803405
HMDB:0002322 1 EFO:0803406
HMDB:0000567 1 EFO:0803407
HMDB:0002035 1 EFO:0803408
HMDB:0035701 1 EFO:0803409
HMDB:0001413 1 EFO:0803410
HMDB:0000905 1 EFO:0803411
HMDB:0037173 1 EFO:0803412
HMDB:0001370 1 EFO:0803413
HMDB:0032216 1 EFO:0803414
HMDB:0002226 1 EFO:0803415
HMDB:0000954 1 EFO:0803416
HMDB:0001254 1 EFO:0803417
HMDB:0001514 1 EFO:0803418
HMDB:0031089 1 EFO:0803419
HMDB:0002259 1 EFO:0803420
HMDB:0000130 1 EFO:0803421
HMDB:0060039 1 EFO:0803422
HMDB:0003447 1 EFO:0803423
HMDB:0060001 1 EFO:0803424
HMDB:0003335 1 EFO:0803425
HMDB:0002250 1 EFO:0803426
HMDB:0035372 1 EFO:0803427
HMDB:0011482 1 EFO:0803428
HMDB:0035068 1 EFO:0803429
HMDB:0029598 1 EFO:0803430
HMDB:0036583 1 EFO:0803431
HMDB:0011561 1 EFO:0803432
HMDB:0011567 1 EFO:0803433
HMDB:0013250 1 EFO:0803434
HMDB:0033442 1 EFO:0803435
HMDB:0041537 1 EFO:0803436
HMDB:0061051 1 EFO:0803437
HMDB:0032740 1 EFO:0803438
HMDB:0033438 1 EFO:0803439
HMDB:0013287 1 EFO:0803440
HMDB:0001132 1 EFO:0803441
HMDB:0002059 1 EFO:0803442
HMDB:0000225 1 EFO:0803443
HMDB:0029239 1 EFO:0803444
HMDB:0029803 1 EFO:0803445
HMDB:0030527 1 EFO:0803446
HMDB:0031149 1 EFO:0803447
HMDB:0001565 1 EFO:0803448
HMDB:0000272 1 EFO:0803449
HMDB:0032472 1 EFO:0803450
HMDB:0003072 1 EFO:0803451
HMDB:0015436 1 EFO:0803452
HMDB:0035802 1 EFO:0803453
HMDB:0038140 1 EFO:0803454
HMDB:0038585 1 EFO:0803455
HMDB:0029890 1 EFO:0803456
HMDB:0000996 1 EFO:0803457
HMDB:0005792 1 EFO:0803458
HMDB:0000757 1 EFO:0803459
HMDB:0060412 1 EFO:0803460
HMDB:0040824 1 EFO:0803461
HMDB:0041785 1 EFO:0803462
HMDB:0000881 1 EFO:0803463
HMDB:0000208 1 EFO:0803464
HMDB:0041919 1 EFO:0803465
HMDB:0001852 1 EFO:0803466
HMDB:0001934 1 EFO:0803467

ICD10: International Classification of Diseases, 10th Revision

Overall, there were 50 invalid xrefs to external prefixed with ICD10 (standardized to Bioregistry prefix icd10) that did not match the standard pattern ^(([XVI]+)|([A-Z][0-9]+((-[A-Z][0-9]+)|(\.[0-9]))?))$.

external_xref usages_count usages
ICD10:C91.10 1 EFO:0000095
ICD10:C91.00 1 EFO:0000220
ICD10:C91.90 1 EFO:0000220
ICD10:C92.00 1 EFO:0000222
ICD10:C92.40 1 EFO:0000224
ICD10:C83.70 1 EFO:0000309
ICD10:C95.90 1 EFO:0000565
ICD10:C00.D48 1 EFO:0000616
ICD10:H11.00 1 EFO:0000678
ICD10:H11.009 1 EFO:0000678
ICD10:J84.112 1 EFO:0000768
ICD10:C34.90 1 EFO:0001071
ICD10:C90.00 1 EFO:0001378
ICD10:D10.D36 1 EFO:0002422
ICD10:D75.81 1 EFO:0002430
ICD10:C94.20 1 EFO:0003025
ICD10:C90.10 1 EFO:0006475
ICD10:C90.30 1 EFO:0006738
ICD10:C94.30 1 EFO:0007359
ICD10:Q85.00 1 EFO:0008514
ICD10:R10.13 1 EFO:0008533
ICD10:351.8 1 EFO:0009380
ICD10:H53.30 1 EFO:0009535
ICD10:I85.01 1 EFO:0009545
ICD10:H00.H06 1 EFO:0009546
ICD10:N40.N51 1 EFO:0009555
ICD10:A69.22 1 EFO:0009562
ICD10:C95.00 1 EFO:1000068
ICD10:C93.30 1 EFO:1000309
ICD10:C64.C68 1 EFO:1000363
ICD10:D18.00 1 EFO:1000635
ICD10:C84.10 1 EFO:1000785
ICD10:A50.06 1 EFO:1000887
ICD10:C91.40 1 EFO:1000956
ICD10:A81.81 1 EFO:1001008
ICD10:D72.823 1 EFO:1001014
ICD10:C84.00 1 EFO:1001051
ICD10:C92.30 1 EFO:1001052
ICD10:A52.02 1 EFO:1001206
ICD10:K75.81 1 EFO:1001249
ICD10:J84.116 1 EFO:1001300
ICD10:H47.14 1 EFO:1001330
ICD10:C51.C58 1 EFO:1001331
ICD10:K76.81 1 EFO:1001346
ICD10:E75.24 1 EFO:1001380
ICD10:O43.01 1 EFO:1001794
ICD10:S52.27 1 EFO:1001811
ICD10:H05.12 1 EFO:1001819
ICD10:H11.15 1 EFO:1001824
ICD10:K68.12 1 EFO:1001832

ICD11: International Classification of Diseases, 11th Revision

Overall, there were 1 invalid xrefs to external prefixed with ICD11 (standardized to Bioregistry prefix icd11) that did not match the standard pattern ^[1-9]\d*$.

external_xref usages_count usages
ICD11:8C62 1 EFO:0020094

ICD9: International Classification of Diseases, 9th Revision

Overall, there were 43 invalid xrefs to external prefixed with ICD9 (standardized to Bioregistry prefix icd9) that did not match the standard pattern ^(\d\d\d|V\d\d|E[8-9]\d\d)(\.\d{1,2})?$.

external_xref usages_count usages
ICD9:520-579.99 2 EFO:0000405, EFO:0009431
ICD9:560-569.99 2 EFO:0000405, EFO:0009431
ICD9:570-579.99 2 EFO:0000405, EFO:0009431
ICD9:390-459.99 1 EFO:0000319
ICD9:420-429.99 1 EFO:0000319
ICD9:490-496.99 1 EFO:0000341
ICD9:401-405.99 1 EFO:0000537
ICD9:140-239.99 1 EFO:0000616
ICD9:290-299.99 1 EFO:0000677
ICD9:460-519.99 1 EFO:0000684
ICD9:500-508.99 1 EFO:0000684
ICD9:510-519.99 1 EFO:0000684
ICD9:060-066.99 1 EFO:0000763
ICD9:042-042.99 1 EFO:0000764
ICD9:010-018.99 1 EFO:0000774
ICD9:290-319.99 1 EFO:0001335
ICD9:300-316.99 1 EFO:0001335
ICD9:410-414.99 1 EFO:0001645
ICD9:210-229.99 1 EFO:0002422
ICD9:430-438.99 1 EFO:0003763
ICD9:338-338.99 1 EFO:0003843
ICD9:317-319.99 1 EFO:0003847
ICD9:64.0 1 EFO:0003953
ICD9:89.52 1 EFO:0004327
ICD9:V85-V85.99 1 EFO:0004340
ICD9:V86-V86.99 1 EFO:0005512
ICD9:280-289.99 1 EFO:0005803
ICD9:540-543.99 1 EFO:0007149
ICD9:350-359.99 1 EFO:0009387
ICD9:610-612.99 1 EFO:0009483
ICD9:600-608.99 1 EFO:0009555
ICD9:93.90 1 EFO:0010719
ICD9:96.7 1 EFO:0010720
ICD9:33.5 1 EFO:0010721
ICD9:08-16 1 EFO:0010722
ICD9:240-246.99 1 EFO:1000627
ICD9:390-392.99 1 EFO:1001160
ICD9:120-129.99 1 EFO:1001342
ICD9:614-616.99 1 EFO:1001388
ICD9:209-209.99 1 EFO:1001901

ICD9CM: International Classification of Diseases, 9th Revision, Clinical Modification

Overall, there were 2 invalid xrefs to external prefixed with ICD9CM (standardized to Bioregistry prefix icd9cm) that did not match the standard pattern ^([\dA-Z]\d{2}(\.\d{1,3}|))|(\d{2}(\.\d{1,2}|))$.

external_xref usages_count usages
ICD9CM:280-289.99 1 EFO:0005803
ICD9CM:390-392.99 1 EFO:1001160

ICDO: International Classification of Diseases for Oncology

Overall, there were 5 invalid xrefs to external prefixed with ICDO (standardized to Bioregistry prefix icdo) that did not match the standard pattern ^[8-9]\d{3}(/[0-3])?$.

external_xref usages_count usages
ICDO:0000/0 2 EFO:1000159, EFO:1000508
ICDO:M9861/3 1 EFO:0000330
ICDO:981-983 1 EFO:0004289
ICDO:8000/6 1 EFO:0009709

IDO: Infectious Disease Ontology

Overall, there were 1 invalid xrefs to external prefixed with IDO (standardized to Bioregistry prefix ido) that did not match the standard pattern ^[0-9]+$.

external_xref usages_count usages
IDO:IDO_0000436 1 EFO:0005741

JAX: Jackson Laboratories Strain

Overall, there were 1 invalid xrefs to external prefixed with JAX (standardized to Bioregistry prefix jax) that did not match the standard pattern ^\d{6}$.

external_xref usages_count usages
JAX:8075 1 EFO:0001341

KEGG: Kyoto Encyclopedia of Genes and Genomes

Overall, there were 7 invalid xrefs to external prefixed with KEGG (standardized to Bioregistry prefix kegg) that did not match the standard pattern ^([CHDEGTMKR]\d+)|(\w+:[\w\d\.-]*)|([a-z]{3,5})|(\w{2,4}\d{5})$.

external_xref usages_count usages
KEGG:05221 1 EFO:0000222
KEGG:05220 1 EFO:0000339
KEGG:05222 1 EFO:0000702
KEGG:05218 1 EFO:0000756
KEGG:05215 1 EFO:0001663
KEGG:05223 1 EFO:0003060
KEGG:05210 1 EFO:0005842

MedDRA: Medical Dictionary for Regulatory Activities Terminology

Overall, there were 10 invalid xrefs to external prefixed with MedDRA (standardized to Bioregistry prefix meddra) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
MedDRA:C0023462 1 EFO:0003025
MedDRA:10020MedDRA:100 1 EFO:0003964
MedDRA:100MedDRA:10022 1 EFO:0007213
MedDRA:10045MedDRA:100 1 EFO:0007529
MedDRA:1005MedDRA:1006 1 EFO:0009248
MedDRA:1000MedDRA:1002 1 EFO:0009657
MedDRA:C1535926 1 EFO:0010642
MedDRA:1001MedDRA:1007 1 EFO:1000879
MedDRA:1001MedDRA:1009 1 EFO:1000879
MedDRA:10049MedDRA:100 1 EFO:1001835

MedlinePlus: MedlinePlus Health Topics

Overall, there were 1 invalid xrefs to external prefixed with MedlinePlus (standardized to Bioregistry prefix medlineplus) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
MedlinePlus: 001381 1 EFO:0000777

MESH: Medical Subject Headings

Overall, there were 2 invalid xrefs to external prefixed with MESH (standardized to Bioregistry prefix mesh) that did not match the standard pattern ^(C|D)\d{6,9}$.

external_xref usages_count usages
MESH:D014253-modified 1 EFO:0007523
MESH:D014323-modified 1 EFO:0007526

MeSH: Medical Subject Headings

Overall, there were 9 invalid xrefs to external prefixed with MeSH (standardized to Bioregistry prefix mesh) that did not match the standard pattern ^(C|D)\d{6,9}$.

external_xref usages_count usages
MeSH:NoID 3 EFO:0007233, EFO:0007422, EFO:0007441
MeSH:DO16518 1 EFO:0004122
MeSH:Q000401 1 EFO:0004352
MeSH:68062025 1 EFO:0010581
MeSH:Q000633 1 EFO:0011061
MeSH:130014 1 EFO:0022194
MeSH:DO14076 1 EFO:1001216

MONDO: Mondo Disease Ontology

Overall, there were 1,757 invalid xrefs to external prefixed with MONDO (standardized to Bioregistry prefix mondo) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
MONDO:patterns/location 627 EFO:0000178, EFO:0000181, EFO:0000182, EFO:0000191, EFO:0000199, …
MONDO:design_pattern 206 EFO:0000191, EFO:0000319, EFO:0000330, EFO:0000405, EFO:0000405, …
MONDO:patterns/specific_infectious_disease_by_agent 170 EFO:0000650, EFO:0000694, EFO:0000763, EFO:0000764, EFO:0000769, …
MONDO:ambiguous 156 EFO:0000217, EFO:0000220, EFO:0000248, EFO:0000275, EFO:0000284, …
MONDO:patterns/location_top 114 EFO:0000319, EFO:0000405, EFO:0000512, EFO:0000540, EFO:0000618, …
MONDO:Lexical 78 EFO:0000095, EFO:0000174, EFO:0000181, EFO:0000198, EFO:0000222, …
MONDO:patterns/neoplasm 66 EFO:0000294, EFO:0002431, EFO:0002626, EFO:0003769, EFO:0003817, …
MONDO:patterns/inflammatory_disease_by_site 63 EFO:0000217, EFO:0000278, EFO:0000465, EFO:0000557, EFO:0000649, …
MONDO:patterns/carcinoma 50 EFO:0000178, EFO:0000182, EFO:0000216, EFO:0000305, EFO:0000501, …
MONDO:patterns/cancer 41 EFO:0000178, EFO:0000326, EFO:0005088, EFO:0005553, EFO:0005557, …
MONDO:cjm 30 EFO:0000182, EFO:0000319, EFO:0000405, EFO:0000508, EFO:0000574, …
MONDO:patterns/chronic 17 EFO:0000337, EFO:0000339, EFO:0000341, EFO:0000342, EFO:0002428, …
MONDO:patterns/infectious_disease_by_agent 12 EFO:0000763, EFO:0004249, EFO:0007128, EFO:0007146, EFO:0007173, …
MONDO:LexicalVariant 12 EFO:0000384, EFO:0003780, EFO:0005625, EFO:0005627, EFO:0005629, …
MONDO:patterns/disease_series_by_gene 11 EFO:0009301, EFO:0009301, EFO:1001333, EFO:1001501, EFO:1001501, …
MONDO:patterns/basis_in_disruption_of_process 10 EFO:0000589, EFO:0000677, EFO:0000677, EFO:0005269, EFO:0005269, …
MONDO:patterns/hereditary 10 EFO:0000508, EFO:0001356, EFO:0001356, EFO:0002945, EFO:0002945, …
MONDO:patterns/sarcoma 10 EFO:0000569, EFO:0000637, EFO:0002914, EFO:0002920, EFO:0003968, …
MONDO:patterns/malignant 10 EFO:0005567, EFO:0008545, EFO:1000124, EFO:1000348, EFO:1000352, …
MONDO:patterns/acute 8 EFO:0000220, EFO:0000221, EFO:0000222, EFO:0002497, EFO:0002497, …
MONDO:patterns/neuroendocrine_neoplasm_grade1 8 EFO:1000092, EFO:1000094, EFO:1000154, EFO:1000188, EFO:1000195, …
MONDO:patterns/allergic_form_of_disease 6 EFO:0000274, EFO:0005854, EFO:0007141, EFO:1000668, EFO:1000669, …
MONDO:patterns/benign 5 EFO:0002422, EFO:1000028, EFO:1000106, EFO:1000108, EFO:1000485
MONDO:patterns/environmental_stimulus 5 EFO:0004712, EFO:0007153, EFO:1000814, EFO:1000851, EFO:1001890
MONDO:patterns/acquired 4 EFO:1000639, EFO:1000639, EFO:1000663, EFO:1000691
MONDO:patterns/congenital 4 EFO:0007217, EFO:0007218, EFO:0007219, EFO:0007220
MONDO:patterns/inborn_metabolic 3 EFO:0005596, EFO:0005596, EFO:0007287
MONDO:patterns/specific_inflammatory_disease_by_site 3 EFO:0005627, EFO:0005629, EFO:0005751
MONDO:patterns/childhood 3 EFO:0000330, EFO:0004594, EFO:0009052
MONDO:patterns/autosomal_recessive 2 EFO:1000017, EFO:1000017
MONDO:patterns/autosomal_dominant 2 EFO:1001496, EFO:1001496
MONDO:DesignPattern 2 EFO:0000294, EFO:1000071
MONDO:patterns/carcinoma_in_situ 2 EFO:0000432, EFO:1000283
MONDO:patterns/neuroendocrine_neoplasm 2 EFO:0005220, EFO:1001928
MONDO:patterns/allergy 2 EFO:0009482, EFO:1001890
MONDO:patterns/adult 2 EFO:1001933, EFO:1001935
MONDO:design_patterns 1 EFO:0000182

NCIm: NCI Metathesaurus

Overall, there were 1 invalid xrefs to external prefixed with NCIm (standardized to Bioregistry prefix ncim) that did not match the standard pattern ^C\d+$.

external_xref usages_count usages
NCIm:CL455363 1 EFO:0003918

NCIT: NCI Thesaurus

Overall, there were 546 invalid xrefs to external prefixed with NCIT (standardized to Bioregistry prefix ncit) that did not match the standard pattern ^C\d+$.

external_xref usages_count usages
NCIT:P378 544 EFO:0000096, EFO:0000186, EFO:0000248, EFO:0000275, EFO:0000308, …
NCIT:C128346-modified 1 EFO:0004720
NCIT:C92189-variant 1 EFO:1001417

NCIt: NCI Thesaurus

Overall, there were 1 invalid xrefs to external prefixed with NCIt (standardized to Bioregistry prefix ncit) that did not match the standard pattern ^C\d+$.

external_xref usages_count usages
NCIt: C12511 1 EFO:0001394

NIFSTD: NIF Standard Ontology

Overall, there were 100 invalid xrefs to external prefixed with NIFSTD (standardized to Bioregistry prefix nif.std) that did not match the standard pattern ^BAMSC\d+$.

external_xref usages_count usages
NIFSTD:birnlex_2117 2 EFO:0002607, EFO:0002694
NIFSTD:birnlex_734 1 EFO:0000107
NIFSTD:birnlex_1581 1 EFO:0000230
NIFSTD:birnlex_2092 1 EFO:0000249
NIFSTD:birnlex_1241 1 EFO:0000252
NIFSTD:birnlex_12566 1 EFO:0000253
NIFSTD:birnlex_2110 1 EFO:0000264
NIFSTD:birnlex_12754 1 EFO:0000289
NIFSTD:birnlex_796 1 EFO:0000302
NIFSTD:birnlex_406 1 EFO:0000311
NIFSTD:birnlex_1489 1 EFO:0000327
NIFSTD:birnlex_934 1 EFO:0000343
NIFSTD:birnlex_1190 1 EFO:0000357
NIFSTD:birnlex_1672 1 EFO:0000381
NIFSTD:nlx_anat_20090201 1 EFO:0000381
NIFSTD:birnlex_1494 1 EFO:0000383
NIFSTD:birnlex_2052 1 EFO:0000433
NIFSTD:birnlex_12718 1 EFO:0000474
NIFSTD:birnlex_12617 1 EFO:0000500
NIFSTD:birnlex_12633 1 EFO:0000502
NIFSTD:birnlex_2023 1 EFO:0000513
NIFSTD:birnlex_12500 1 EFO:0000533
NIFSTD:birnlex_174 1 EFO:0000598
NIFSTD:birnlex_557 1 EFO:0000600
NIFSTD:birnlex_206 1 EFO:0000602
NIFSTD:birnlex_398 1 EFO:0000605
NIFSTD:birnlex_393 1 EFO:0000606
NIFSTD:birnlex_12631 1 EFO:0000621
NIFSTD:birnlex_12604 1 EFO:0000622
NIFSTD:birnlex_2087 1 EFO:0000651
NIFSTD:birnlex_12606 1 EFO:0000658
NIFSTD:birnlex_12669 1 EFO:0000677
NIFSTD:birnlex_203 1 EFO:0000679
NIFSTD:birnlex_2104 1 EFO:0000692
NIFSTD:birnlex_12603 1 EFO:0000693
NIFSTD:birnlex_12783 1 EFO:0000712
NIFSTD:birnlex_12733 1 EFO:0000773
NIFSTD:birnlex_844 1 EFO:0000802
NIFSTD:birnlex_1062 1 EFO:0000826
NIFSTD:birnlex_1169 1 EFO:0000827
NIFSTD:birnlex_1153 1 EFO:0000832
NIFSTD:birnlex_1166 1 EFO:0000895
NIFSTD:birnlex_2596 1 EFO:0000900
NIFSTD:birnlex_826 1 EFO:0000904
NIFSTD:birnlex_1234 1 EFO:0000905
NIFSTD:birnlex_1373 1 EFO:0000907
NIFSTD:birnlex_1099 1 EFO:0000908
NIFSTD:birnlex_1509 1 EFO:0000909
NIFSTD:birnlex_954 1 EFO:0000910
NIFSTD:birnlex_1503 1 EFO:0000911
NIFSTD:birnlex_1115 1 EFO:0000912
NIFSTD:birnlex_928 1 EFO:0000913
NIFSTD:nlx_anat_20090601 1 EFO:0000913
NIFSTD:birnlex_1710 1 EFO:0000918
NIFSTD:birnlex_1667 1 EFO:0000919
NIFSTD:birnlex_942 1 EFO:0000923
NIFSTD:birnlex_957 1 EFO:0000924
NIFSTD:birnlex_1230 1 EFO:0000964
NIFSTD:sao1078172392 1 EFO:0000966
NIFSTD:sao1642908940 1 EFO:0000967
NIFSTD:nlx_dys_20090502 1 EFO:0001064
NIFSTD:nlx_dys_20090302 1 EFO:0001073
NIFSTD:nlx_dys_20090303 1 EFO:0001074
NIFSTD:birnlex_12770 1 EFO:0001079
NIFSTD:birnlex_228 1 EFO:0001272
NIFSTD:birnlex_681 1 EFO:0001272
NIFSTD:birnlex_577 1 EFO:0001327
NIFSTD:birnlex_152 1 EFO:0001331
NIFSTD:birnlex_106 1 EFO:0001332
NIFSTD:birnlex_320 1 EFO:0001342
NIFSTD:birnlex_214 1 EFO:0001352
NIFSTD:birnlex_266 1 EFO:0001352
NIFSTD:birnlex_438 1 EFO:0001355
NIFSTD:birnlex_695 1 EFO:0001355
NIFSTD:birnlex_12679 1 EFO:0001358
NIFSTD:birnlex_12812 1 EFO:0001365
NIFSTD:birnlex_1178 1 EFO:0001366
NIFSTD:sao1145756102 1 EFO:0001369
NIFSTD:birnlex_429 1 EFO:0001372
NIFSTD:birnlex_699 1 EFO:0001372
NIFSTD:birnlex_733 1 EFO:0001394
NIFSTD:sao279801585 1 EFO:0001444
NIFSTD:birnlex_2525 1 EFO:0001644
NIFSTD:sao2146594471 1 EFO:0001651
NIFSTD:sao1703115805 1 EFO:0001653
NIFSTD:sao-282380853 1 EFO:0001654
NIFSTD:birnlex_2391 1 EFO:0001715
NIFSTD:sao196989303 1 EFO:0001715
NIFSTD:birnlex_2085 1 EFO:0001738
NIFSTD:birnlex_3016 1 EFO:0001799
NIFSTD:birnlex_982 1 EFO:0001919
NIFSTD:birnlex_1263 1 EFO:0001961
NIFSTD:birnlex_1565 1 EFO:0001962
NIFSTD:birnlex_1202 1 EFO:0001987
NIFSTD:birnlex_12573 1 EFO:0002505
NIFSTD:birnlex_2098 1 EFO:0002508
NIFSTD:birnlex_12697 1 EFO:0002512
NIFSTD:birnlex_484 1 EFO:0002543
NIFSTD:birnlex_12648 1 EFO:0002624

OBI: Ontology for Biomedical Investigations

Overall, there were 1 invalid xrefs to external prefixed with OBI (standardized to Bioregistry prefix obi) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
OBI:OBI_1110054 1 EFO:0005140

OMIM: Online Mendelian Inheritance in Man

Overall, there were 49 invalid xrefs to external prefixed with OMIM (standardized to Bioregistry prefix omim) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
OMIM:genemap2 49 EFO:0000174, EFO:0000181, EFO:0000182, EFO:0000191, EFO:0000198, …

ORDO: Orphanet Rare Disease Ontology

Overall, there were 39 invalid xrefs to external prefixed with ORDO (standardized to Bioregistry prefix orphanet.ordo) that did not match the standard pattern ^C?\d+$.

external_xref usages_count usages
ORDO:Orphanet_71273 2 EFO:1001838, EFO:1001915
ORDO:Orphanet_803 1 EFO:0000253
ORDO:Orphanet_217569 1 EFO:0000538
ORDO:Orphanet_3386 1 EFO:0008559
ORDO:Orphanet_454710 1 EFO:0008597
ORDO:Orphanet_79481 1 EFO:0008601
ORDO:Orphanet_63455 1 EFO:0008602
ORDO:Orphanet_79480 1 EFO:0008603
ORDO:Orphanet_46486 1 EFO:1000680
ORDO:Orphanet_107 1 EFO:1001251
ORDO:Orphanet_1457 1 EFO:1001267
ORDO:Orphanet_36205 1 EFO:1001293
ORDO:Orphanet_65279 1 EFO:1001294
ORDO:Orphanet_58220 1 EFO:1001295
ORDO:Orphanet_86864 1 EFO:1001341
ORDO:Orphanet_33543 1 EFO:1001354
ORDO:Orphanet_158011 1 EFO:1001376
ORDO:Orphanet_1183 1 EFO:1001383
ORDO:Orphanet_3392 1 EFO:1001444
ORDO:Orphanet_879 1 EFO:1001445
ORDO:Orphanet_662 1 EFO:1001452
ORDO:Orphanet_168956 1 EFO:1001467
ORDO:Orphanet_217720 1 EFO:1001473
ORDO:Orphanet_188 1 EFO:1001477
ORDO:Orphanet_963 1 EFO:1001485
ORDO:Orphanet_228119 1 EFO:1001795
ORDO:Orphanet_158061 1 EFO:1001806
ORDO:Orphanet_306682 1 EFO:1001808
ORDO:Orphanet_221074 1 EFO:1001809
ORDO:Orphanet_137617 1 EFO:1001814
ORDO:Orphanet_157835 1 EFO:1001822
ORDO:Orphanet_43116 1 EFO:1001842
ORDO:Orphanet_36236 1 EFO:1001849
ORDO:Orphanet_838 1 EFO:1001856
ORDO:Orphanet_3287 1 EFO:1001857
ORDO:Orphanet_83467 1 EFO:1001897
ORDO:Orphanet_85414 1 EFO:1001999
ORDO:Orphanet_66529 1 EFO:1002000

Orphanet: Orphanet

Overall, there were 1 invalid xrefs to external prefixed with Orphanet (standardized to Bioregistry prefix orphanet) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
Orphanet:189427-definition 1 EFO:0009041

PMID: PubMed

Overall, there were 9 invalid xrefs to external prefixed with PMID (standardized to Bioregistry prefix pubmed) that did not match the standard pattern ^\d+$.

external_xref usages_count usages
PMID: 11246871 1 EFO:0002540
PMID:PMC1531688 1 EFO:0005725
PMID: 3897439 1 EFO:0005910
PMID: 8788275 1 EFO:0005913
PMID:27149984 1 EFO:0007836
PMID: 31636452 1 EFO:0010605
PMID:25167691 1 EFO:0010695
PMID: 32355309 1 EFO:0010749
PMID: 19881539 1 EFO:0022445

Reactome: Reactome

Overall, there were 3 invalid xrefs to external prefixed with Reactome (standardized to Bioregistry prefix reactome) that did not match the standard pattern ^R-[A-Z]{3}-\d+(-\d+)?(\.\d+)?$.

external_xref usages_count usages
Reactome:Q9HB96 1 EFO:0009914
Reactome:Q9ULP9 1 EFO:0009915
Reactome:Q9NP58 1 EFO:0009916

SNOMEDCT: SNOMED CT (International Edition)

Overall, there were 3 invalid xrefs to external prefixed with SNOMEDCT (standardized to Bioregistry prefix snomedct) that did not match the standard pattern ^(\w+)?\d+$.

external_xref usages_count usages
SNOMEDCT: 266417001 1 EFO:0010688
SNOMEDCT:88039007 1 EFO:0010721
SNOMEDCT: 274897005 1 EFO:1001841

TADS: Tick Anatomy Ontology

Overall, there were 1 invalid xrefs to external prefixed with TADS (standardized to Bioregistry prefix tads) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
TADS:000315 1 EFO:0000935

TGMA: Mosquito gross anatomy ontology

Overall, there were 1 invalid xrefs to external prefixed with TGMA (standardized to Bioregistry prefix tgma) that did not match the standard pattern ^\d{7}$.

external_xref usages_count usages
TGMA:000136 1 EFO:0000965

UMLS: Unified Medical Language System Concept Unique Identifier

Overall, there were 94 invalid xrefs to external prefixed with UMLS (standardized to Bioregistry prefix umls) that did not match the standard pattern ^C\d+$.

external_xref usages_count usages
UMLS:CN242113 1 EFO:0000350
UMLS:CN043071 1 EFO:0000384
UMLS:CN227279 1 EFO:0000519
UMLS:CN236628 1 EFO:0000616
UMLS:CN205405 1 EFO:0000621
UMLS:CN205129 1 EFO:0000640
UMLS:CN240636 1 EFO:0000677
UMLS:CN202001 1 EFO:0000693
UMLS:CN244903 1 EFO:0000702
UMLS:CN206012 1 EFO:0000717
UMLS:CN971653 1 EFO:0000756
UMLS:CN204440 1 EFO:0000775
UMLS:CN200519 1 EFO:0001361
UMLS:CN236639 1 EFO:0003144
UMLS:CN236661 1 EFO:0003777
UMLS:CN239852 1 EFO:0003777
UMLS:CN197370 1 EFO:0003850
UMLS:CN236627 1 EFO:0003869
UMLS:CN236629 1 EFO:0003893
UMLS:CN580792 1 EFO:0003900
UMLS:CN205090 1 EFO:0004209
UMLS:CN043606 1 EFO:0004236
UMLS:CN236651 1 EFO:0004240
UMLS:CN236678 1 EFO:0004247
UMLS:CN204768 1 EFO:0004260
UMLS:CN240645 1 EFO:0004262
UMLS:CN118841 1 EFO:0004911
UMLS:CN169364 1 EFO:0005207
UMLS:CN237762 1 EFO:0005222
UMLS:CN169366 1 EFO:0005410
UMLS:CN204600 1 EFO:0005717
UMLS:CN237663 1 EFO:0005783
UMLS:CN206939 1 EFO:0005803
UMLS:CN882913 1 EFO:0005803
UMLS:CN206062 1 EFO:0005855
UMLS:CN205033 1 EFO:0006462
UMLS:CN242134 1 EFO:0006513
UMLS:CN206037 1 EFO:0007135
UMLS:CN199179 1 EFO:0007183
UMLS:CN205187 1 EFO:0007195
UMLS:CN201384 1 EFO:0007211
UMLS:CN205282 1 EFO:0007342
UMLS:CN203069 1 EFO:0007460
UMLS:CN204884 1 EFO:0008507
UMLS:CN237754 1 EFO:0008597
UMLS:CN206006 1 EFO:0008598
UMLS:CN205981 1 EFO:0008613
UMLS:CL520437 1 EFO:0008614
UMLS:CN239183 1 EFO:0009039
UMLS:CN200644 1 EFO:0009041
UMLS:CN072455 1 EFO:0009052
UMLS:CN202862 1 EFO:0009068
UMLS:CN240512 1 EFO:0009068
UMLS:CN671932 1 EFO:0009152
UMLS:CN237682 1 EFO:0009160
UMLS:CN237555 1 EFO:0009199
UMLS:CN226092 1 EFO:0009266
UMLS:CN737161 1 EFO:0009300
UMLS:CN237671 1 EFO:0009553
UMLS:CN226018 1 EFO:0009646
UMLS:CN226030 1 EFO:0009646
UMLS:CN226270 1 EFO:0009646
UMLS:CN072436 1 EFO:0009907
UMLS:CN206246 1 EFO:0010580
UMLS:CN226945 1 EFO:1000015
UMLS:CN203416 1 EFO:1000027
UMLS:CN201941 1 EFO:1000028
UMLS:CN205034 1 EFO:1000042
UMLS:CL343552 1 EFO:1000056
UMLS:CN202866 1 EFO:1000129
UMLS:CN201056 1 EFO:1000242
UMLS:CN237470 1 EFO:1000278
UMLS:CN206982 1 EFO:1000297
UMLS:CN203938 1 EFO:1000314
UMLS:CN202288 1 EFO:1000395
UMLS:CN204702 1 EFO:1000570
UMLS:CN207411 1 EFO:1000576
UMLS:CN237530 1 EFO:1000607
UMLS:CN201658 1 EFO:1000737
UMLS:CN202712 1 EFO:1000780
UMLS:CN205287 1 EFO:1000797
UMLS:CN242089 1 EFO:1000850
UMLS:CN203409 1 EFO:1001142
UMLS:CN206761 1 EFO:1001221
UMLS:CN226908 1 EFO:1001473
UMLS:CN119611 1 EFO:1001496
UMLS:CN206284 1 EFO:1001901
UMLS:CN237515 1 EFO:1001928
UMLS:CN221574 1 EFO:1001951
UMLS:CN204398 1 EFO:1001968
UMLS:CN237712 1 EFO:1001987
UMLS:CN205479 1 EFO:1002000
UMLS:CN207484 1 EFO:1002008
UMLS:CN580795 1 EFO:1002049

Wikipedia: Wikipedia

Overall, there were 2 invalid xrefs to external prefixed with Wikipedia (standardized to Bioregistry prefix wikipedia.en) that did not match the standard pattern ^\S+$.

external_xref usages_count usages
Wikipedia:Single cell sequencing 2 EFO:0008913, EFO:0008913
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