This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in eco. See the GitHub repository.
DisProt: DisProtOverall, there were 7 invalid
xrefs to external prefixed with DisProt (standardized to Bioregistry
prefix disprot) that
did not match the standard pattern ^DP\d{5}$.
| external_xref | usages_count | usages |
|---|---|---|
DisProt:BalintMeszaros |
7 | ECO:0006183, ECO:0006185, ECO:0006187, ECO:0006188, ECO:0006189, … |
ECO: Evidence ontologyOverall, there were 1,483 invalid
xrefs to external prefixed with ECO (standardized to Bioregistry
prefix eco) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
ECO:RCT |
718 | ECO:0000009, ECO:0000011, ECO:0000033, ECO:0000053, ECO:0000054, … |
ECO:SN |
394 | ECO:0000001, ECO:0000002, ECO:0000018, ECO:0000021, ECO:0000028, … |
ECO:MCC |
297 | ECO:0000000, ECO:0000007, ECO:0000008, ECO:0000019, ECO:0000020, … |
ECO:SW |
58 | ECO:0000085, ECO:0000095, ECO:0000096, ECO:0000106, ECO:0000109, … |
ECO:MG |
8 | ECO:0006186, ECO:0006252, ECO:0006341, ECO:0006345, ECO:0006346, … |
ECO:KAV |
3 | ECO:0000003, ECO:0000154, ECO:0000164 |
ECO:KIM |
2 | ECO:0000004, ECO:0000096 |
ECO:RCJ |
2 | ECO:0001828, ECO:0007850 |
ECO:cjm |
1 | ECO:0000501 |
ENA: European Nucleotide ArchiveOverall, there were 1 invalid
xrefs to external prefixed with ENA (standardized to Bioregistry
prefix ena.embl) that
did not match the standard pattern ^[A-Z]+[0-9]+(\.\d+)?$.
| external_xref | usages_count | usages |
|---|---|---|
ENA:Peter |
1 | ECO:0008014 |
ERO: eagle-i resource ontologyOverall, there were 1 invalid
xrefs to external prefixed with ERO (standardized to Bioregistry
prefix ero) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
ERO:0000329|URL:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907272/ |
1 | ECO:0007043 |
GO: Gene OntologyOverall, there were 7 invalid
xrefs to external prefixed with GO (standardized to Bioregistry
prefix go) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
GO:IEP |
3 | ECO:0000008, ECO:0007006, ECO:0007007 |
GO:IMP |
3 | ECO:0000015, ECO:0007000, ECO:0007001 |
GO:TAS |
1 | ECO:0000033 |
HPO: Human Phenotype OntologyOverall, there were 2 invalid
xrefs to external prefixed with HPO (standardized to Bioregistry
prefix hp) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
HPO:PCS |
1 | ECO:0006017 |
HPO:ICE |
1 | ECO:0006019 |
PomBase: PomBaseOverall, there were 1 invalid
xrefs to external prefixed with PomBase (standardized to Bioregistry
prefix pombase) that
did not match the standard pattern ^S\w+(\.)?\w+(\.)?$.
| external_xref | usages_count | usages |
|---|---|---|
PomBase:MAH |
1 | ECO:0000095 |
UniProt: UniProt ProteinOverall, there were 1 invalid
xrefs to external prefixed with UniProt (standardized to Bioregistry
prefix uniprot) that
did not match the standard pattern ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$.
| external_xref | usages_count | usages |
|---|---|---|
UniProt:Vishal Joshi |
1 | ECO:0008002 |