This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in dto. See the GitHub repository.
ChEBI: Chemical Entities of Biological InterestOverall, there were 1 invalid
xrefs to external prefixed with ChEBI (standardized to Bioregistry
prefix chebi) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
ChEBI:C00209 |
1 | CHEBI:30623 |
ChemIDplus: ChemIDplusOverall, there were 1 invalid
xrefs to external prefixed with ChemIDplus (standardized to Bioregistry
prefix chemidplus) that
did not match the standard pattern ^\d+\-\d+\-\d+$.
| external_xref | usages_count | usages |
|---|---|---|
ChemIDplus:1764436 |
1 | CHEBI:15355 |
KEGG COMPOUND: KEGG CompoundOverall, there were 39 invalid
xrefs to external prefixed with KEGG COMPOUND (standardized to Bioregistry
prefix kegg.compound) that
did not match the standard pattern ^C\d+$.
| external_xref | usages_count | usages |
|---|---|---|
KEGG COMPOUND:51-84-3 |
1 | CHEBI:15355 |
KEGG COMPOUND:56-65-5 |
1 | CHEBI:15422 |
KEGG COMPOUND:56-40-6 |
1 | CHEBI:15428 |
KEGG COMPOUND:41598-07-6 |
1 | CHEBI:15555 |
KEGG COMPOUND:63-39-8 |
1 | CHEBI:15713 |
KEGG COMPOUND:110-15-6 |
1 | CHEBI:15741 |
KEGG COMPOUND:56-86-0 |
1 | CHEBI:16015 |
KEGG COMPOUND:58-61-7 |
1 | CHEBI:16335 |
KEGG COMPOUND:474-25-9 |
1 | CHEBI:16755 |
KEGG COMPOUND:20398-34-9 |
1 | CHEBI:16761 |
KEGG COMPOUND:58-64-0 |
1 | CHEBI:16761 |
KEGG COMPOUND:73-31-4 |
1 | CHEBI:16796 |
KEGG COMPOUND:19794-97-9 |
1 | CHEBI:16893 |
KEGG COMPOUND:72025-60-6 |
1 | CHEBI:16978 |
KEGG COMPOUND:58-98-0 |
1 | CHEBI:17659 |
KEGG COMPOUND:16887-00-6 |
1 | CHEBI:17996 |
KEGG COMPOUND:62-31-7 |
1 | CHEBI:18243 |
KEGG COMPOUND:51-45-6 |
1 | CHEBI:18295 |
KEGG COMPOUND:64-04-0 |
1 | CHEBI:18397 |
KEGG COMPOUND:94421-68-8 |
1 | CHEBI:2700 |
KEGG COMPOUND:50-67-9 |
1 | CHEBI:28790 |
KEGG COMPOUND:51-43-4 |
1 | CHEBI:28918 |
KEGG COMPOUND:1393-25-5 |
1 | CHEBI:34972 |
KEGG COMPOUND:17034-35-4 |
1 | CHEBI:34972 |
KEGG COMPOUND:26993-30-6 |
1 | CHEBI:37550 |
KEGG COMPOUND:7439-93-2 |
1 | CHEBI:49713 |
KEGG COMPOUND:53847-30-6 |
1 | CHEBI:52392 |
KEGG COMPOUND:9007-92-5 |
1 | CHEBI:5391 |
KEGG COMPOUND:54397-84-1 |
1 | CHEBI:63977 |
KEGG COMPOUND:89663-86-5 |
1 | CHEBI:6498 |
KEGG COMPOUND:2956-16-3 |
1 | CHEBI:67119 |
KEGG COMPOUND:39379-15-2 |
1 | CHEBI:7542 |
KEGG COMPOUND:55508-42-4 |
1 | CHEBI:7542 |
KEGG COMPOUND:60748-06-3 |
1 | CHEBI:75441 |
KEGG COMPOUND:123626-67-5 |
1 | CHEBI:80240 |
KEGG COMPOUND:125692-40-2 |
1 | CHEBI:80243 |
KEGG COMPOUND:67382-96-1 |
1 | CHEBI:80254 |
KEGG COMPOUND:148498-78-6 |
1 | CHEBI:80339 |
KEGG COMPOUND:9002-04-4 |
1 | CHEBI:9574 |
MESH: Medical Subject HeadingsOverall, there were 25 invalid
xrefs to external prefixed with MESH (standardized to Bioregistry
prefix mesh) that
did not match the standard pattern ^(C|D)\d{6,9}$.
| external_xref | usages_count | usages |
|---|---|---|
MESH:A05.360.319.679.256 |
1 | UBERON:0000002 |
MESH:A05.810.776 |
1 | UBERON:0000056 |
MESH:A03.492.411 |
1 | UBERON:0000160 |
MESH:A01.236 |
1 | UBERON:0000310 |
MESH:A05.360.444.849 |
1 | UBERON:0000473 |
MESH:A03.492.766 |
1 | UBERON:0000945 |
MESH:A08.186.211 |
1 | UBERON:0000955 |
MESH:A05.360.319.114.630 |
1 | UBERON:0000992 |
MESH:A05.360.319.679 |
1 | UBERON:0000995 |
MESH:A05.360.319.887 |
1 | UBERON:0000997 |
MESH:A08 |
1 | UBERON:0001016 |
MESH:A03.365 |
1 | UBERON:0001043 |
MESH:A05.810.161 |
1 | UBERON:0001255 |
MESH:A03.734 |
1 | UBERON:0001264 |
MESH:A12.207.152.693 |
1 | UBERON:0001969 |
MESH:A06.407.900 |
1 | UBERON:0002046 |
MESH:A04.411 |
1 | UBERON:0002048 |
MESH:A17.815 |
1 | UBERON:0002097 |
MESH:A03.620 |
1 | UBERON:0002107 |
MESH:A03.159.439 |
1 | UBERON:0002110 |
MESH:A05.810.453 |
1 | UBERON:0002113 |
MESH:A03.492.411.620.270 |
1 | UBERON:0002114 |
MESH:A05.360.444.575 |
1 | UBERON:0002367 |
MESH:A06.407.071 |
1 | UBERON:0002369 |
MESH:A02.633 |
1 | UBERON:0002385 |
ncithesaurus: NCI ThesaurusOverall, there were 28 invalid
xrefs to external prefixed with ncithesaurus (standardized to Bioregistry
prefix ncit) that
did not match the standard pattern ^C\d+$.
| external_xref | usages_count | usages |
|---|---|---|
ncithesaurus:Cervix |
1 | UBERON:0000002 |
ncithesaurus:Ureter |
1 | UBERON:0000056 |
ncithesaurus:Intestine |
1 | UBERON:0000160 |
ncithesaurus:Breast |
1 | UBERON:0000310 |
ncithesaurus:Testis |
1 | UBERON:0000473 |
ncithesaurus:Stomach |
1 | UBERON:0000945 |
ncithesaurus:Brain |
1 | UBERON:0000955 |
ncithesaurus:Ovary |
1 | UBERON:0000992 |
ncithesaurus:Uterus |
1 | UBERON:0000995 |
ncithesaurus:Vulva |
1 | UBERON:0000997 |
ncithesaurus:Nervous_System |
1 | UBERON:0001016 |
ncithesaurus:Esophagus |
1 | UBERON:0001043 |
ncithesaurus:Anatomic_Structure_System_or_Substance |
1 | UBERON:0001062 |
ncithesaurus:Bladder |
1 | UBERON:0001255 |
ncithesaurus:Pancreas |
1 | UBERON:0001264 |
ncithesaurus:Bone |
1 | UBERON:0001474 |
ncithesaurus:Plasma |
1 | UBERON:0001969 |
ncithesaurus:Thyroid_Gland |
1 | UBERON:0002046 |
ncithesaurus:Lung |
1 | UBERON:0002048 |
ncithesaurus:Skin |
1 | UBERON:0002097 |
ncithesaurus:Liver |
1 | UBERON:0002107 |
ncithesaurus:Gallbladder |
1 | UBERON:0002110 |
ncithesaurus:Kidney |
1 | UBERON:0002113 |
ncithesaurus:Duodenum |
1 | UBERON:0002114 |
ncithesaurus:Prostate_Gland |
1 | UBERON:0002367 |
ncithesaurus:Adrenal_Gland |
1 | UBERON:0002369 |
ncithesaurus:Muscle_Tissue |
1 | UBERON:0002385 |
ncithesaurus:Head_and_Neck |
1 | UBERON:0007811 |
PDBeChem: Chemical Component DictionaryOverall, there were 2 invalid
xrefs to external prefixed with PDBeChem (standardized to Bioregistry
prefix pdb-ccd) that
did not match the standard pattern ^\w{1,3}$.
| external_xref | usages_count | usages |
|---|---|---|
PDBeChem:GLU_LFOH |
1 | CHEBI:16015 |
PDBeChem:ALA_LFOH |
1 | CHEBI:16977 |
Reaxys: ReaxysOverall, there were 1 invalid
xrefs to external prefixed with Reaxys (standardized to Bioregistry
prefix reaxys) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
Reaxys:82337-46-0 |
1 | CHEBI:34144 |
Wikipedia: WikipediaOverall, there were 9 invalid
xrefs to external prefixed with Wikipedia (standardized to Bioregistry
prefix wikipedia.en) that
did not match the standard pattern ^\S+$.
| external_xref | usages_count | usages |
|---|---|---|
Wikipedia:Adenosine triphosphate |
1 | CHEBI:15422 |
Wikipedia:Prostaglandin D2 |
1 | CHEBI:15555 |
Wikipedia:Uridine triphosphate |
1 | CHEBI:15713 |
Wikipedia:Succinic acid |
1 | CHEBI:15741 |
Wikipedia:Chenodeoxycholic acid |
1 | CHEBI:16755 |
Wikipedia:Leukotriene C4 |
1 | CHEBI:16978 |
Wikipedia:3-Hydroxybutyric acid |
1 | CHEBI:20067 |
Wikipedia:Sphingosine 1-phosphate |
1 | CHEBI:37550 |
Wikipedia:Angiotensin II |
1 | CHEBI:48432 |