oquat

cl

This document details the invalid local unique identifiers used in CURIEs for node, synonym, and definition cross-references in cl. See the GitHub repository.

BTO: BRENDA Tissue Ontology

Overall, there were 1 invalid xrefs to external prefixed with BTO (standardized to Bioregistry prefix bto) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
BTO:000125	1	CL:1000398

CARO: Common Anatomy Reference Ontology

Overall, there were 2 invalid xrefs to external prefixed with CARO (standardized to Bioregistry prefix caro) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
CARO:mah	2	CL:0000000, CL:0000003

CL: Cell Ontology

Overall, there were 22 invalid xrefs to external prefixed with CL (standardized to Bioregistry prefix cl) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
CL:CVS	16	CL:0000212, CL:0005000, CL:0005001, CL:0005002, CL:0005003, …
CL:MAH	3	CL:0007007, CL:0007008, CL:0007011
CL:curator	1	CL:0005018
CL:patterns/cellPartOfAnatomicalEntity	1	CL:0011030
CL:cjm	1	CL:1000742

FB: FlyBase Gene

Overall, there were 25 invalid xrefs to external prefixed with FB (standardized to Bioregistry prefix flybase) that did not match the standard pattern ^FB\w{2}\d{7}$.

external_xref	usages_count	usages
FB:ma	25	CL:0000004, CL:0000063, CL:0000066, CL:0000134, CL:0000144, …

Flybase: FlyBase Gene

Overall, there were 1 invalid xrefs to external prefixed with Flybase (standardized to Bioregistry prefix flybase) that did not match the standard pattern ^FB\w{2}\d{7}$.

external_xref	usages_count	usages
Flybase:dsj	1	CL:0000362

FlyBase: FlyBase Gene

Overall, there were 1 invalid xrefs to external prefixed with FlyBase (standardized to Bioregistry prefix flybase) that did not match the standard pattern ^FB\w{2}\d{7}$.

external_xref	usages_count	usages
FlyBase:ds	1	CL:0000463

GC: Genetic Code

Overall, there were 1 invalid xrefs to external prefixed with GC (standardized to Bioregistry prefix gc) that did not match the standard pattern ^\d+$.

external_xref	usages_count	usages
GC:tfm	1	CL:0002597

GO: Gene Ontology

Overall, there were 17 invalid xrefs to external prefixed with GO (standardized to Bioregistry prefix go) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
GO:tfm	16	CL:0000478, CL:0000479, CL:0000480, CL:0000481, CL:0000482, …
GO:cvs	1	CL:0005008

HPA: Human Protein Atlas tissue profile information

Overall, there were 7 invalid xrefs to external prefixed with HPA (standardized to Bioregistry prefix hpa) that did not match the standard pattern ^ENSG\d{11}$.

external_xref	usages_count	usages
HPA:HPA	6	CL:1001586, CL:1001591, CL:1001593, CL:1001596, CL:1001599, …
HPA:Breast	1	CL:1001583

KUPO: Kidney and Urinary Pathway Ontology

Overall, there were 1 invalid xrefs to external prefixed with KUPO (standardized to Bioregistry prefix kupo) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
KUPO:SJ	1	CL:0002518

MA: Mouse adult gross anatomy

Overall, there were 4 invalid xrefs to external prefixed with MA (standardized to Bioregistry prefix ma) that did not match the standard pattern ^\d+$.

external_xref	usages_count	usages
MA:ma	4	CL:0000362, CL:0000724, CL:0000730, CL:0000731

MP: Mammalian Phenotype Ontology

Overall, there were 1 invalid xrefs to external prefixed with MP (standardized to Bioregistry prefix mp) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
MP:19876834	1	CL:0002488

NCI_Thesaurus: NCI Thesaurus

Overall, there were 1 invalid xrefs to external prefixed with NCI_Thesaurus (standardized to Bioregistry prefix ncit) that did not match the standard pattern ^C\d+$.

external_xref	usages_count	usages
NCI_Thesaurus:Small_Intestinal_Glandular_Cell	1	CL:1001598

ncithesaurus: NCI Thesaurus

Overall, there were 4 invalid xrefs to external prefixed with ncithesaurus (standardized to Bioregistry prefix ncit) that did not match the standard pattern ^C\d+$.

external_xref	usages_count	usages
ncithesaurus:Spermatogenic_Cell	1	CL:0000015
ncithesaurus:Egg	1	CL:0000021
ncithesaurus:Beta_Cell	1	CL:0000169
ncithesaurus:Blastemal_Cell	1	CL:0000354

NIFSTD: NIF Standard Ontology

Overall, there were 4 invalid xrefs to external prefixed with NIFSTD (standardized to Bioregistry prefix nif.std) that did not match the standard pattern ^BAMSC\d+$.

external_xref	usages_count	usages
NIFSTD:sao131261273	2	CL:1001571, CL:1001571
NIFSTD:sao1415726815	1	CL:0000119
NIFSTD:sao862606388	1	CL:0000598

ReO: Reagent Ontology

Overall, there were 7 invalid xrefs to external prefixed with ReO (standardized to Bioregistry prefix reo) that did not match the standard pattern ^\d{7}$.

external_xref	usages_count	usages
ReO:mhb	7	CL:0000001, CL:0000002, CL:0000010, CL:0000578, CL:0001034, …

SAO: Subcellular Anatomy Ontology

Overall, there were 1 invalid xrefs to external prefixed with SAO (standardized to Bioregistry prefix sao) that did not match the standard pattern ^\d+$.

external_xref	usages_count	usages
SAO:sao131261273	1	CL:1001571

SGD: Saccharomyces Genome Database

Overall, there were 19 invalid xrefs to external prefixed with SGD (standardized to Bioregistry prefix sgd) that did not match the standard pattern ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$.

external_xref	usages_count	usages
SGD:clt	19	CL:0000596, CL:0000597, CL:0000599, CL:0000605, CL:0000606, …

ZFIN: Zebrafish Information Network Gene

Overall, there were 6 invalid xrefs to external prefixed with ZFIN (standardized to Bioregistry prefix zfin) that did not match the standard pattern ^ZDB\-\w+\-\d+\-\d+$.

external_xref	usages_count	usages
ZFIN:CVS	5	CL:0005023, CL:0005024, CL:0005025, CL:0011100, CL:0015000
ZFIN:YB	1	CL:0011100

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