This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in cl. See the GitHub repository.
BTO: BRENDA Tissue OntologyOverall, there were 1 invalid
xrefs to external prefixed with BTO (standardized to Bioregistry
prefix bto) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
BTO:000125 |
1 | CL:1000398 |
CARO: Common Anatomy Reference OntologyOverall, there were 2 invalid
xrefs to external prefixed with CARO (standardized to Bioregistry
prefix caro) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
CARO:mah |
2 | CL:0000000, CL:0000003 |
CL: Cell OntologyOverall, there were 22 invalid
xrefs to external prefixed with CL (standardized to Bioregistry
prefix cl) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
CL:CVS |
16 | CL:0000212, CL:0005000, CL:0005001, CL:0005002, CL:0005003, … |
CL:MAH |
3 | CL:0007007, CL:0007008, CL:0007011 |
CL:curator |
1 | CL:0005018 |
CL:patterns/cellPartOfAnatomicalEntity |
1 | CL:0011030 |
CL:cjm |
1 | CL:1000742 |
doi: Digital Object IdentifierOverall, there were 20 invalid
xrefs to external prefixed with doi (standardized to Bioregistry
prefix doi) that
did not match the standard pattern ^10.\d{2,9}/.*$.
| external_xref | usages_count | usages |
|---|---|---|
doi:/10.1371/journal.pbio.3001032 |
4 | CL:4052008, CL:4052008, CL:4052009, CL:4052009 |
doi:/10.1101/2022.06.17.496207 |
3 | CL:4052020, CL:4052020, CL:4052021 |
doi:/10.1101/2024.12.15.628550 |
3 | CL:4052045, CL:4052046, CL:4052047 |
doi:/10.1101/2024.07.02.601324 |
2 | CL:0000114, CL:0000114 |
doi:/10.1016/j.autneu.2015.04.008 |
2 | CL:0002152, CL:0002244 |
doi:/10.1101/2022.09.26.509561 |
2 | CL:4052037, CL:4052037 |
doi:/10.3389/fncel.2021.703951 |
1 | CL:0000065 |
doi:/10.1016/B978-0-12-410424-2.00003-2 |
1 | CL:0000079 |
doi:/10.1038/s41467-021-27901-5 |
1 | CL:4052006 |
doi:/10.1101/2022.02.16.480779 |
1 | CL:4052040 |
FB: FlyBase GeneOverall, there were 25 invalid
xrefs to external prefixed with FB (standardized to Bioregistry
prefix flybase) that
did not match the standard pattern ^FB\w{2}\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
FB:ma |
25 | CL:0000004, CL:0000063, CL:0000066, CL:0000134, CL:0000144, … |
Flybase: FlyBase GeneOverall, there were 1 invalid
xrefs to external prefixed with Flybase (standardized to Bioregistry
prefix flybase) that
did not match the standard pattern ^FB\w{2}\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
Flybase:dsj |
1 | CL:0000362 |
FlyBase: FlyBase GeneOverall, there were 1 invalid
xrefs to external prefixed with FlyBase (standardized to Bioregistry
prefix flybase) that
did not match the standard pattern ^FB\w{2}\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
FlyBase:ds |
1 | CL:0000463 |
GC: Genetic CodeOverall, there were 1 invalid
xrefs to external prefixed with GC (standardized to Bioregistry
prefix ncbi.gc) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
GC:tfm |
1 | CL:0002597 |
GO: Gene OntologyOverall, there were 17 invalid
xrefs to external prefixed with GO (standardized to Bioregistry
prefix go) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
GO:tfm |
16 | CL:0000478, CL:0000479, CL:0000480, CL:0000481, CL:0000482, … |
GO:cvs |
1 | CL:0005008 |
HPA: Human Protein Atlas tissue profile informationOverall, there were 7 invalid
xrefs to external prefixed with HPA (standardized to Bioregistry
prefix hpa) that
did not match the standard pattern ^ENSG\d{11}$.
| external_xref | usages_count | usages |
|---|---|---|
HPA:HPA |
6 | CL:1001586, CL:1001591, CL:1001593, CL:1001596, CL:1001599, … |
HPA:Breast |
1 | CL:1001583 |
KUPO: Kidney and Urinary Pathway OntologyOverall, there were 1 invalid
xrefs to external prefixed with KUPO (standardized to Bioregistry
prefix kupo) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
KUPO:SJ |
1 | CL:0002518 |
MA: Mouse adult gross anatomyOverall, there were 4 invalid
xrefs to external prefixed with MA (standardized to Bioregistry
prefix ma) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
MA:ma |
4 | CL:0000362, CL:0000724, CL:0000730, CL:0000731 |
MP: Mammalian Phenotype OntologyOverall, there were 1 invalid
xrefs to external prefixed with MP (standardized to Bioregistry
prefix mp) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
MP:19876834 |
1 | CL:0002488 |
NCI_Thesaurus: NCI ThesaurusOverall, there were 1 invalid
xrefs to external prefixed with NCI_Thesaurus (standardized to Bioregistry
prefix ncit) that
did not match the standard pattern ^[CRPA]\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NCI_Thesaurus:Small_Intestinal_Glandular_Cell |
1 | CL:1001598 |
ncithesaurus: NCI ThesaurusOverall, there were 4 invalid
xrefs to external prefixed with ncithesaurus (standardized to Bioregistry
prefix ncit) that
did not match the standard pattern ^[CRPA]\d+$.
| external_xref | usages_count | usages |
|---|---|---|
ncithesaurus:Spermatogenic_Cell |
1 | CL:0000015 |
ncithesaurus:Egg |
1 | CL:0000021 |
ncithesaurus:Beta_Cell |
1 | CL:0000169 |
ncithesaurus:Blastemal_Cell |
1 | CL:0000354 |
NIFSTD: NIF Standard OntologyOverall, there were 4 invalid
xrefs to external prefixed with NIFSTD (standardized to Bioregistry
prefix nif.std) that
did not match the standard pattern ^BAMSC\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NIFSTD:sao131261273 |
2 | CL:1001571, CL:1001571 |
NIFSTD:sao1415726815 |
1 | CL:0000119 |
NIFSTD:sao862606388 |
1 | CL:0000598 |
ReO: Reagent OntologyOverall, there were 7 invalid
xrefs to external prefixed with ReO (standardized to Bioregistry
prefix reo) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
ReO:mhb |
7 | CL:0000001, CL:0000002, CL:0000010, CL:0000578, CL:0001034, … |
SAO: Subcellular Anatomy OntologyOverall, there were 1 invalid
xrefs to external prefixed with SAO (standardized to Bioregistry
prefix sao) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
SAO:sao131261273 |
1 | CL:1001571 |
SGD: Saccharomyces Genome DatabaseOverall, there were 19 invalid
xrefs to external prefixed with SGD (standardized to Bioregistry
prefix sgd) that
did not match the standard pattern ^((S\d+$)|(Y[A-Z]{2}\d{3}[a-zA-Z](\-[A-Z])?))$.
| external_xref | usages_count | usages |
|---|---|---|
SGD:clt |
19 | CL:0000596, CL:0000597, CL:0000599, CL:0000605, CL:0000606, … |
VSAO: Vertebrate Skeletal Anatomy OntologyOverall, there were 2 invalid
xrefs to external prefixed with VSAO (standardized to Bioregistry
prefix vsao) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
VSAO:curator |
2 | CL:0001039, CL:0001040 |
ZFIN: Zebrafish Information Network GeneOverall, there were 6 invalid
xrefs to external prefixed with ZFIN (standardized to Bioregistry
prefix zfin) that
did not match the standard pattern ^ZDB\-\w+\-\d+\-\d+$.
| external_xref | usages_count | usages |
|---|---|---|
ZFIN:CVS |
5 | CL:0005023, CL:0005024, CL:0005025, CL:0011100, CL:0015000 |
ZFIN:YB |
1 | CL:0011100 |