This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in ccf. See the GitHub repository.
AAO: Amphibian gross anatomyOverall, there were 1 invalid
xrefs to external prefixed with AAO (standardized to Bioregistry
prefix aao) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
AAO:LAP |
1 | UBERON:0002375 |
AEO: Anatomical Entity OntologyOverall, there were 3 invalid
xrefs to external prefixed with AEO (standardized to Bioregistry
prefix aeo) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
AEO:JB |
2 | UBERON:0001637, UBERON:0007524 |
AEO:000020 |
1 | UBERON:0001013 |
BTO: BRENDA Tissue OntologyOverall, there were 1 invalid
xrefs to external prefixed with BTO (standardized to Bioregistry
prefix bto) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
BTO:000125 |
1 | CL:1000398 |
CARO: Common Anatomy Reference OntologyOverall, there were 4 invalid
xrefs to external prefixed with CARO (standardized to Bioregistry
prefix caro) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
CARO:mah |
2 | CL:0000000, CL:0000003 |
CARO:DOS |
2 | UBERON:0000475, UBERON:0000478 |
CL: Cell OntologyOverall, there were 15 invalid
xrefs to external prefixed with CL (standardized to Bioregistry
prefix cl) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
CL:tm |
10 | UBERON:0004041, UBERON:0004042, UBERON:0005196, UBERON:0009039, UBERON:0010420, … |
CL:CVS |
4 | CL:0000212, CL:0005009, CL:0005010, CL:0005011 |
CL:cjm |
1 | CL:1000742 |
DHBA: Developing Human Brain AtlasOverall, there were 2 invalid
xrefs to external prefixed with DHBA (standardized to Bioregistry
prefix dhba) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
DHBA:ILN |
1 | UBERON:0002733 |
DHBA:HGM |
1 | UBERON:0019263 |
DMBA: Developing Mouse Brain AtlasOverall, there were 3 invalid
xrefs to external prefixed with DMBA (standardized to Bioregistry
prefix dmba) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
DMBA:CbHCx |
1 | UBERON:0002129 |
DMBA:DTTh |
1 | UBERON:0004703 |
DMBA:Bar |
1 | UBERON:0007632 |
DOI: Digital Object IdentifierOverall, there were 1 invalid
xrefs to external prefixed with DOI (standardized to Bioregistry
prefix doi) that
did not match the standard pattern ^10.\d{2,9}/.*$.
| external_xref | usages_count | usages |
|---|---|---|
DOI:https://doi.org/10.1378/chest.12-2762 |
1 | CL:0000158 |
EMAPA: Mouse Developmental Anatomy OntologyOverall, there were 1 invalid
xrefs to external prefixed with EMAPA (standardized to Bioregistry
prefix emapa) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
EMAPA:th |
1 | UBERON:0001638 |
FB: FlyBase GeneOverall, there were 5 invalid
xrefs to external prefixed with FB (standardized to Bioregistry
prefix flybase) that
did not match the standard pattern ^FB\w{2}\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
FB:ma |
5 | CL:0000066, CL:0000183, CL:0000211, CL:0000325, CL:0000393 |
FMA: Foundational Model of AnatomyOverall, there were 271 invalid
xrefs to external prefixed with FMA (standardized to Bioregistry
prefix fma) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
FMA:TA |
261 | UBERON:0000002, UBERON:0000010, UBERON:0000348, UBERON:0000362, UBERON:0000375, … |
FMA:FMA |
5 | UBERON:0000485, UBERON:0001943, UBERON:0002137, UBERON:0002167, UBERON:0002168 |
FMA:CMA |
5 | UBERON:0002022, UBERON:0002657, UBERON:0002740, UBERON:0002756, UBERON:0034891 |
GC: Genetic CodeOverall, there were 1 invalid
xrefs to external prefixed with GC (standardized to Bioregistry
prefix gc) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
GC:tfm |
1 | CL:0002597 |
GO: Gene OntologyOverall, there were 3 invalid
xrefs to external prefixed with GO (standardized to Bioregistry
prefix go) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
GO:tfm |
2 | CL:0000509, CL:0002576 |
GO:GO |
1 | UBERON:0000016 |
HBA: Human Brain AtlasOverall, there were 3 invalid
xrefs to external prefixed with HBA (standardized to Bioregistry
prefix hba) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
HBA:DTL |
1 | UBERON:0002736 |
HBA:MESWM |
1 | UBERON:0016554 |
HBA:PLT |
1 | UBERON:0022268 |
HPA: Human Protein Atlas tissue profile informationOverall, there were 1 invalid
xrefs to external prefixed with HPA (standardized to Bioregistry
prefix hpa) that
did not match the standard pattern ^ENSG\d{11}$.
| external_xref | usages_count | usages |
|---|---|---|
HPA:HPA |
1 | CL:1001599 |
KUPO: Kidney and Urinary Pathway OntologyOverall, there were 1 invalid
xrefs to external prefixed with KUPO (standardized to Bioregistry
prefix kupo) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
KUPO:SJ |
1 | CL:0002518 |
MESH: Medical Subject HeadingsOverall, there were 41 invalid
xrefs to external prefixed with MESH (standardized to Bioregistry
prefix mesh) that
did not match the standard pattern ^(C|D)\d{6,9}$.
| external_xref | usages_count | usages |
|---|---|---|
MESH:A02.835.232.500.247.343 |
2 | UBERON:0006767, UBERON:0006767 |
MESH:A02.513.170 |
2 | UBERON:0012332, UBERON:0012332 |
MESH:A09.371.060.067.31 |
1 | CL:0000132 |
MESH:A03.492.766.440.250 |
1 | CL:0000577 |
MESH:A03.734.414 |
1 | UBERON:0000006 |
MESH:A07.541.510 |
1 | UBERON:0000946 |
MESH:A07.231.114.056 |
1 | UBERON:0000947 |
MESH:A09.371.060.217 |
1 | UBERON:0000964 |
MESH:A10.165.114 |
1 | UBERON:0001013 |
MESH:A02.633.567.900.500 |
1 | UBERON:0001111 |
MESH:A07.231.114.565.755 |
1 | UBERON:0001182 |
MESH:A05.360.319.679.490 |
1 | UBERON:0001295 |
MESH:A02.633.570.500 |
1 | UBERON:0001296 |
MESH:A02.835.232.251 |
1 | UBERON:0001437 |
MESH:A09.371.060.217.325 |
1 | UBERON:0001772 |
MESH:A08.800.800.720 |
1 | UBERON:0001780 |
MESH:A09.371.060.200 |
1 | UBERON:0001811 |
MESH:A07.231.432.952 |
1 | UBERON:0001979 |
MESH:A10.272.491 |
1 | UBERON:0001986 |
MESH:A08.186.211.132.810.428.200 |
1 | UBERON:0002037 |
MESH:A08.186.854.610.800 |
1 | UBERON:0002181 |
MESH:A04.411.125 |
1 | UBERON:0002185 |
MESH:A07.231.114.681 |
1 | UBERON:0002250 |
MESH:A05.810.453.736.520.380 |
1 | UBERON:0002320 |
MESH:A10.615.284.473 |
1 | UBERON:0003124 |
MESH:A02.513.514.475 |
1 | UBERON:0003676 |
MESH:A02.633.567.600 |
1 | UBERON:0003681 |
MESH:A02.633.567.750 |
1 | UBERON:0003682 |
MESH:A07.231.114.565 |
1 | UBERON:0005616 |
MESH:A07.231.908.670.385 |
1 | UBERON:0005617 |
MESH:A02.633.567.700 |
1 | UBERON:0006531 |
MESH:A07.231.114.895 |
1 | UBERON:0007610 |
MESH:A02.633.567.825 |
1 | UBERON:0008450 |
MESH:A03.734.667 |
1 | UBERON:0001064 |
MESH:A02.835.232.834 |
1 | UBERON:0001130 |
MESH:A08.800.800.120.680.660 |
1 | UBERON:0001783 |
MESH:A02.835.232 |
1 | UBERON:0002481 |
MESH:A05.810.453.736.560.570 |
1 | UBERON:0004134 |
MESH:A16.254.403.473.200 |
1 | UBERON:0007106 |
MGI: Mouse Genome InformaticsOverall, there were 67 invalid
xrefs to external prefixed with MGI (standardized to Bioregistry
prefix mgi) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
MGI:csmith |
20 | UBERON:0000305, UBERON:0000995, UBERON:0001111, UBERON:0001140, UBERON:0001174, … |
MGI:anna |
18 | UBERON:0000114, UBERON:0001070, UBERON:0001255, UBERON:0001257, UBERON:0001259, … |
MGI:cwg |
15 | UBERON:0001013, UBERON:0001543, UBERON:0001738, UBERON:0001740, UBERON:0001901, … |
MGI:smb |
5 | UBERON:0000362, UBERON:0001295, UBERON:0001772, UBERON:0003604, UBERON:0003889 |
MGI:monikat |
2 | UBERON:0002115, UBERON:0002493 |
MGI:brs |
1 | UBERON:0001296 |
MGI:hdene |
1 | UBERON:0001439 |
MGI:llw2 |
1 | UBERON:0001451 |
MGI:Anna |
1 | UBERON:0005203 |
MGI:pvb |
1 | UBERON:0005623 |
MGI:cs |
1 | UBERON:0035655 |
MGI: |
1 | http://identifiers.org/hgnc/2764 |
MP: Mammalian Phenotype OntologyOverall, there were 9 invalid
xrefs to external prefixed with MP (standardized to Bioregistry
prefix mp) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
MP:MP |
9 | UBERON:0001259, UBERON:0001947, UBERON:0005452, UBERON:0010396, UBERON:0010397, … |
ncithesaurus: NCI ThesaurusOverall, there were 94 invalid
xrefs to external prefixed with ncithesaurus (standardized to Bioregistry
prefix ncit) that
did not match the standard pattern ^C\d+$.
| external_xref | usages_count | usages |
|---|---|---|
ncithesaurus:Ileal_Vein |
1 | UBERON:0001217 |
ncithesaurus:Median_Basilic_Vein |
1 | UBERON:0001414 |
ncithesaurus:Pectoralis_Muscle |
1 | UBERON:0001495 |
ncithesaurus:Submental_Vein |
1 | UBERON:0001655 |
ncithesaurus:Deep_Temporal_Vein |
1 | UBERON:0001661 |
ncithesaurus:Thymic_Lobule |
1 | UBERON:0002125 |
ncithesaurus:Endometrial_Stroma |
1 | UBERON:0002337 |
ncithesaurus:Anterior_Cruciate_Ligament |
1 | UBERON:0003671 |
ncithesaurus:Splenic_Vein |
1 | UBERON:0003713 |
ncithesaurus:Gastric_Vein |
1 | UBERON:0004450 |
ncithesaurus:Digital_Vein |
1 | UBERON:0004562 |
ncithesaurus:Rib_3 |
1 | UBERON:0004603 |
ncithesaurus:Rib_4 |
1 | UBERON:0004604 |
ncithesaurus:Rib_5 |
1 | UBERON:0004605 |
ncithesaurus:Rib_6 |
1 | UBERON:0004606 |
ncithesaurus:Rib_7 |
1 | UBERON:0004607 |
ncithesaurus:Rib_9 |
1 | UBERON:0004608 |
ncithesaurus:C3_Vertebra |
1 | UBERON:0004612 |
ncithesaurus:C4_Vertebra |
1 | UBERON:0004613 |
ncithesaurus:C5_Vertebra |
1 | UBERON:0004614 |
ncithesaurus:C6_Vertebra |
1 | UBERON:0004615 |
ncithesaurus:L1_Vertebra |
1 | UBERON:0004617 |
ncithesaurus:L2_Vertebra |
1 | UBERON:0004618 |
ncithesaurus:L3_Vertebra |
1 | UBERON:0004619 |
ncithesaurus:L4_Vertebra |
1 | UBERON:0004620 |
ncithesaurus:L5_Vertebra |
1 | UBERON:0004621 |
ncithesaurus:T1_Vertebra |
1 | UBERON:0004626 |
ncithesaurus:T2_Vertebra |
1 | UBERON:0004627 |
ncithesaurus:T3_Vertebra |
1 | UBERON:0004628 |
ncithesaurus:T4_Vertebra |
1 | UBERON:0004629 |
ncithesaurus:T5_Vertebra |
1 | UBERON:0004630 |
ncithesaurus:T6_Vertebra |
1 | UBERON:0004631 |
ncithesaurus:T7_Vertebra |
1 | UBERON:0004632 |
ncithesaurus:T9_Vertebra |
1 | UBERON:0004633 |
ncithesaurus:T10_Vertebra |
1 | UBERON:0004634 |
ncithesaurus:T11_Vertebra |
1 | UBERON:0004635 |
ncithesaurus:T12_Vertebra |
1 | UBERON:0004636 |
ncithesaurus:Iliac_Vein |
1 | UBERON:0005610 |
ncithesaurus:Aortic_Segment |
1 | UBERON:0005800 |
ncithesaurus:Communicating_Artery |
1 | UBERON:0006347 |
ncithesaurus:Epigastric_Artery |
1 | UBERON:0006349 |
ncithesaurus:Inferior_Thyroid_Artery |
1 | UBERON:0007149 |
ncithesaurus:Inferior_Sagittal_Sinus |
1 | UBERON:0007152 |
ncithesaurus:Deep_Epigastric_Vein |
1 | UBERON:0007154 |
ncithesaurus:Lung_Lower_Lobe |
1 | UBERON:0008949 |
ncithesaurus:Circumflex_Iliac_Artery |
1 | UBERON:0009026 |
ncithesaurus:Alveolar_Artery |
1 | UBERON:0009654 |
ncithesaurus:Auricular_Artery |
1 | UBERON:0009655 |
ncithesaurus:Anterior_Inferior_Cerebellar_Artery |
1 | UBERON:0009689 |
ncithesaurus:Lobe |
1 | UBERON:0009912 |
ncithesaurus:Pulmonary_Lobule |
1 | UBERON:0010368 |
ncithesaurus:Rib_8 |
1 | UBERON:0010757 |
ncithesaurus:T8_Vertebra |
1 | UBERON:0011050 |
ncithesaurus:Endocervical_Glandular_Epithelium |
1 | UBERON:0012252 |
ncithesaurus:Interlobular_Duct |
1 | UBERON:0014716 |
ncithesaurus:Calcarine_Artery |
1 | UBERON:0035183 |
ncithesaurus:Anterior_Temporal_Artery |
1 | UBERON:0035225 |
ncithesaurus:Superficial_Middle_Cerebral_Vein |
1 | UBERON:0035231 |
ncithesaurus:Medial_Femoral_Vein |
1 | UBERON:0035234 |
ncithesaurus:Posterior_External_Jugular_Vein |
1 | UBERON:0035249 |
ncithesaurus:Left_Subcostal_Vein |
1 | UBERON:0035252 |
ncithesaurus:Supraclavicular_Lymph_Node |
1 | UBERON:0035279 |
ncithesaurus:Base_of_the_Prostate |
1 | UBERON:0035331 |
ncithesaurus:Small_Cardiac_Vein |
1 | UBERON:0035374 |
ncithesaurus:Cystic_Vein |
1 | UBERON:0035392 |
ncithesaurus:Right_Suprarenal_Vein |
1 | UBERON:0035435 |
ncithesaurus:Apex_of_the_Prostate |
1 | UBERON:0035441 |
ncithesaurus:Anterior_Parietal_Artery |
1 | UBERON:0035462 |
ncithesaurus:Right_Subcostal_Vein |
1 | UBERON:0035474 |
ncithesaurus:Left_Suprarenal_Vein |
1 | UBERON:0035483 |
ncithesaurus:Lymph_Node_Hilum |
1 | UBERON:0035495 |
ncithesaurus:Deep_Middle_Cerebral_Vein |
1 | UBERON:0035532 |
ncithesaurus:Esophageal_Artery |
1 | UBERON:0035539 |
ncithesaurus:Superficial_Vein |
1 | UBERON:0035550 |
ncithesaurus:Splenic_Pulp |
1 | UBERON:1000023 |
ncithesaurus:Muscularis_Propria |
1 | UBERON:0000381 |
ncithesaurus:Pons_Varolii |
1 | UBERON:0000988 |
ncithesaurus:Cortical_Column |
1 | UBERON:0001284 |
ncithesaurus:Pyramid_of_Malpighi |
1 | UBERON:0004200 |
ncithesaurus:Ileocecocolic_Lymph_Node |
1 | UBERON:0016378 |
ncithesaurus:Beta_Cell |
1 | CL:0000169 |
ncithesaurus:Heart_Muscle |
1 | UBERON:0001133 |
ncithesaurus:Transverse_Sinus |
1 | UBERON:0001641 |
ncithesaurus:Insula |
1 | UBERON:0002022 |
ncithesaurus:Cerebral_Aqueduct |
1 | UBERON:0002289 |
ncithesaurus:Middle_Frontal_Gyrus |
1 | UBERON:0002702 |
ncithesaurus:Inferior_Temporal_Gyrus |
1 | UBERON:0002751 |
ncithesaurus:Superior_Temporal_Gyrus |
1 | UBERON:0002769 |
ncithesaurus:Middle_Temporal_Gyrus |
1 | UBERON:0002771 |
ncithesaurus:Inferior_Frontal_Gyrus |
1 | UBERON:0002998 |
ncithesaurus:Dorsal_Thalamus |
1 | UBERON:0004703 |
ncithesaurus:Sigmoid_Sinus |
1 | UBERON:0005475 |
ncithesaurus:Straight_Sinus |
1 | UBERON:0005481 |
ncithesaurus:Adrenal_Artery |
1 | UBERON:0005624 |
NIF_Subcellular: NIF Standard Ontology: Subcellular EntitiesOverall, there were 2 invalid
xrefs to external prefixed with NIF_Subcellular (standardized to Bioregistry
prefix nlx.sub) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NIF_Subcellular:sao1397492660 |
1 | UBERON:0000482 |
NIF_Subcellular:sao1145756102 |
1 | UBERON:0001130 |
NIFSTD: NIF Standard OntologyOverall, there were 39 invalid
xrefs to external prefixed with NIFSTD (standardized to Bioregistry
prefix nif.std) that
did not match the standard pattern ^BAMSC\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NIFSTD:NeuroNames_abbrevSource |
39 | UBERON:0001579, UBERON:0001643, UBERON:0001644, UBERON:0001645, UBERON:0001646, … |
NLM: National Library of Medicine CatalogOverall, there were 1 invalid
xrefs to external prefixed with NLM (standardized to Bioregistry
prefix nlm) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
NLM:thymus |
1 | UBERON:0002370 |
PBA: Primate Brain AtlasOverall, there were 1 invalid
xrefs to external prefixed with PBA (standardized to Bioregistry
prefix pba) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
PBA:BN |
1 | UBERON:0010011 |
TAO: Teleost Anatomy OntologyOverall, there were 1 invalid
xrefs to external prefixed with TAO (standardized to Bioregistry
prefix tao) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
TAO:MAH |
1 | UBERON:0001703 |
UBERON: Uber Anatomy OntologyOverall, there were 31 invalid
xrefs to external prefixed with UBERON (standardized to Bioregistry
prefix uberon) that
did not match the standard pattern ^\d+$.
| external_xref | usages_count | usages |
|---|---|---|
UBERON:cjm |
27 | UBERON:0001221, UBERON:0001402, UBERON:0001413, UBERON:0001450, UBERON:0001452, … |
UBERON:mah |
2 | UBERON:0001427, UBERON:0001428 |
UBERON:automatic |
2 | UBERON:0004766, UBERON:0004766 |
ZFIN: Zebrafish Information Network GeneOverall, there were 14 invalid
xrefs to external prefixed with ZFIN (standardized to Bioregistry
prefix zfin) that
did not match the standard pattern ^ZDB\-\w+\-\d+\-\d+$.
| external_xref | usages_count | usages |
|---|---|---|
ZFIN:curator |
14 | UBERON:0000966, UBERON:0001083, UBERON:0001245, UBERON:0001281, UBERON:0001681, … |