This document details the invalid local unique identifiers used in CURIEs
for node, synonym, and definition cross-references in bs. See the GitHub repository.
SO: Sequence types and features ontologyOverall, there were 33 invalid
xrefs to external prefixed with SO (standardized to Bioregistry
prefix so) that
did not match the standard pattern ^\d{7}$.
| external_xref | usages_count | usages |
|---|---|---|
SO:cb |
19 | SO:0000419, SO:0001070, SO:0001072, SO:0001073, SO:0001074, … |
SO:ke |
12 | SO:0000409, SO:0000839, SO:0001146, SO:0100020, so/subsets/biosapiens#adjacent:to, … |
SO:GAR |
1 | SO:0000839 |
SO:immuno_workshop |
1 | so/subsets/biosapiens#variant:of |
UniProt: UniProt ProteinOverall, there were 21 invalid
xrefs to external prefixed with UniProt (standardized to Bioregistry
prefix uniprot) that
did not match the standard pattern ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$.
| external_xref | usages_count | usages |
|---|---|---|
UniProt:curation_manual |
19 | SO:0001064, SO:0001066, SO:0001067, SO:0001080, SO:0001083, … |
UniProt:curator_manual |
1 | SO:0001077 |
UniProt:Curation_manual |
1 | SO:0001093 |
uniprot: UniProt ProteinOverall, there were 30 invalid
xrefs to external prefixed with uniprot (standardized to Bioregistry
prefix uniprot) that
did not match the standard pattern ^([A-N,R-Z][0-9]([A-Z][A-Z, 0-9][A-Z, 0-9][0-9]){1,2})|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$.
| external_xref | usages_count | usages |
|---|---|---|
uniprot:feature_type |
28 | SO:0000417, SO:0000418, SO:0000419, SO:0000691, SO:0000725, … |
uniprot:curation |
1 | SO:0001091 |
uniprot:feature |
1 | SO:0100020 |