oquat

Invalid Identifier Analysis

This analysis has been conducted across all ontologies listed in the Bioregistry by loading them from source with ROBOT, converting to OBO Graph JSON, then looking through all nodes’ xrefs, nodes’ synonyms’ xrefs, and nodes’ definitions’ xrefs to see which ones make references using identifiers that don’t validate against patterns in the Bioregistry.

xref_prefix sources count example_xref example_node
clo cellosaurus 34125 CLO:CLO_0035863 Cellosaurus#CVCL:6G90
reactome nif, cco, pw, orphanet, efo, cmpo 24842 Reactome:REACT_109443 GO:0003720
vfb fbbt 21480 VFB:FBbt_20006410 FBbt:20006410
hgnc nif, cco, so 13619 HGNC:mw SO:0001877
mgi uberon, lpt, vt, go, nif, cco, enm, mp, bto, clm, so 13458 MGI:anna VT:0006028
mmrrc cellosaurus 10735 MMRRC:MMRRC:014986-UCD Cellosaurus#CVCL:LY26
clinvar rdo, orphanet 3942 ClinVar:VCV000983267 DOID:9000729
rcb cellosaurus 2736 RCB:HPS2884 Cellosaurus#CVCL:A3KA
bto cellosaurus, nif, cl, efo, clm 2441 BTO:000125 CL:1000398
icd11 rdo, doid, nif, covoc, orphanet, efo 2368 ICD11:8C62 EFO:0020094
efo rdo, cellosaurus, vt, mmo 1790 EFO:MONDO:0018416 DOID:9009256
jcrb cellosaurus 1520 JCRB:NIHS0729 Cellosaurus#CVCL:4Y16
orphanet.ordo cellosaurus, efo 1422 ORDO:Orphanet_617910 Cellosaurus#CVCL:M594
omim rdo, bao, obci, doid, nif, pw, hp, epso 1322 MIM:PS312080 DOID:0060786
ebisc cellosaurus 1190 EBiSC:CHDIi051-A Cellosaurus#CVCL:VD22
nlx.sub bao, uberon, go, nif, plana, chr, cco, covoc, clm, cmpo 939 NIF_Subcellular:nlx_subcell_100315 GO:0005575
mesh rdo, uberon, xco, obci, icdo, vt, hom, nif, vo, pw, covoc, ro, zfa, enm, dto, efo, mp, epso, clm, mondo 849 MESH:A06.407.071.140.960 UBERON:0002053
tkg cellosaurus 662 TKG:TKG 0375 Cellosaurus#CVCL:0337
pride dpbo, cellosaurus 625 PRIDE:PXD010027 Cellosaurus#CVCL:0019
mirbase ncro 592 miRBase:MIPF0001438 NCRO:0003182
ncit bao, uberon, xao, icdo, idomal, nif, cl, plana, pw, hp, dto, efo, mp, epso, clm, mondo 563 ncithesaurus:Bladder UBERON:0001255
uniprot xco, go, nif, bs, covoc, eco, so 501 UniProt:Curation_manual SO:0001093
unimod mod 432 Unimod:10#M MOD:00403
geonames enm, envo, bcio, aeon 357 Geonames:P.PPLS ENVO:00000062
fbtc cellosaurus, enm, efo 343 FlyBase_Cell_line:FBtc9000006 Cellosaurus#CVCL:Z232
coriell cellosaurus 235 Coriell:AICS-0096-074 Cellosaurus#CVCL:A6XH
bcrc cellosaurus 206 BCRC:08C0041 Cellosaurus#CVCL:LG95
kegg bao, obci, doid, nif, cco, pw, covoc, efo, epso 197 KEGG:05210 DOID:9256
estdab cellosaurus 197 ESTDAB:ESTDAB-221 Cellosaurus#CVCL:A200
hmdb enm, efo 170 HMDB:0003447 EFO:0803423
nif.std bao, uberon, nif, cl, covoc, enm, efo, mp, epso, clm, mondo 153 NIFSTD:sao1415726815 CL:0000119
smid chebi 150 SMID:ibha%2310 CHEBI:79334
mondo rdo, covoc, efo, mondo 127 MONDO:patterns/inflammatory_disease_by_site MONDO:0005533
umbbd.enzyme go, nif 120 UM-BBD_enzymeID:r0328 GO:0018805
pubmed unimod, fypo, xco, mod, tgma, vt, vbo, cmo, pato, nif, plana, cco, pw, hp, enm, efo, mi, bto, mondo, mpath, so 115 PMID::8305734 BTO:0005634
tcdb go, nif, cco 113 TC:1.B.12.-.- GO:0015474
umls vo, covoc, hp, efo, epso 112 UMLS:0189573 HP:0034420
atcc cellosaurus 105 ATCC:CRM-CCL-2 Cellosaurus#CVCL:0030
icd10 orphanet, hp, efo, epso 102 ICD10:G47.41 MONDO:0016158
so dpbo, fypo, obci, geno, icdo, fbcv, hom, nif, bs, ro, enm, clm, so 94 SO:immuno_workshop SO:0000704
ihw cellosaurus 93 IHW:9w 0904 Cellosaurus#CVCL:E673
drugbank chebi, nif 86 DrugBank:DBSALT003069 CHEBI:91243
door fbbt 83 DoOR:Or33c FBbt:00067036
icd9 covoc, enm, efo, epso, mondo 82 ICD9:140-239.99 MONDO:0005070
cas miro, chebi, vsmo, enm, efo, xlmod, peco 81 CAS:139609-20-4,PubChem_Compound:90469951 XLMOD:02152
resid mod 81 RESID:AA0592#ASN MOD:01938
icdo rdo, bao, doid, nif, hp, efo, epso, mondo, mpath 79 ICDO:8000/6 EFO:0009709
tao uberon, tao, vsao, hom, nif, ro, zfa, tto, vto, clm 77 TAO:homologous_to HOM:0000007
go fypo, uberon, omp, go, pato, vsao, nif, cl, cco, to, aeo, zfa, mi, eco, mp, clm, cmpo, so 76 GO:00006302 MP:0010948
wormbase uberon, wbbt, go, fbcv, nif, wbls, wbphenotype, bto, clm, so 72 WB:cgc122 WBPhenotype:0000635
icd9cm rdo, bao, obci, doid, nif, mfomd, efo, epso, mondo 70 ICD9CM:060-066.99 DOID:934
smpdb pw 66 SMP:00374 PW:0001992
uniprot.var nif 64 UniProtKB_VAR:VAR_056121 PR:000028715
pid.pathway nif, pw 57 PID:pi3kciaktpathway PR:000003103
cba cellosaurus 51 CBA:CBA-0161 Cellosaurus#CVCL:2574
kegg.compound nif, dto, sibo 50 KEGG.COMPOUND:c01432 SIBO:0000190
genatlas orphanet 50 Genatlas:HLA-DPB1 http://www.orpha.net/ORDO/Orphanet_362495
aao uberon, nif, clm 49 AAO:HM UBERON:3010690
pdb-ccd chebi, obci, nif, dto 49 PDBeChem:MET_LFOH CHEBI:16643
ncbitaxon dpbo, taxrank, tto 47 NCBITaxon:species NCIT:C45293
uberon mmusdv, uberon, vsao, poro, nif, bspo, zfa, enm, clm 38 UBERON:cjm PORO:0000044
zfin uberon, tao, go, vsao, nif, cl, zfa, clm, so 38 ZFIN:ZDB-PUB-120419-3. ZFA:0005877
dhba uberon, nif 34 DHBA:HNM UBERON:0001892
hba uberon, nif 34 HBA:TELCom UBERON:0019294
chemidplus chebi, dto 34 ChemIDplus:1764436 CHEBI:15355
pombase fypo, nif, eco, cmpo, so 33 PomBase:mahle FYPO:0007633
gmelin chebi, msio, nif 33 Gmelin:79 CHEBI:16134
flybase uberon, nif, cl, covoc, zfa, bto, clm, so 32 FlyBase:ds CL:0000463
dmba uberon, nif 32 DMBA:dpy UBERON:0002755
emapa mmusdv, uberon, nif 30 EMAPA:TS07 MmusDv:0000011
pr obci, nif, covoc, efo 27 PRO:DAN EFO:0003021
wwf.ecoregion enm, envo 26 WWF:AA1303 ENVO:01001577
rgd rs, xco, vt, mmo, cmo, pw, mp 23 RGD:MS CMO:0000533
cl uberon, tao, nif, cl, zfa, clm 23 CL:Curator ZFA:0005242
ehdaa2 hsapdv 23 EHDAA2:CS20 HsapDv:0000027
doi nif, cl, enm, efo, clm, so 23 doi:/10.1016/B978-0-12-410424-2.00003-2 CL:0000079
pato pato, nif, to, po, enm, cmpo 22 PATO:000014 TO:0000486
maizegdb.locus to, zea 21 MaizeGDB:??? TO:0000923
zfa uberon, tao, go, nif, clm 19 ZFA:00001557 GO:0039021
snomedct genepio, omp, vo, efo 18 SNOMEDCT: 55262006 VO:0002452
vsao uberon, tao, xao, vsao, nif, cl, zfa, clm 18 VSAO:MAH VSAO:0000215
lipidmaps chebi, msio, nif 18 LIPID_MAPS_class:LMGP12 CHEBI:76529
omp omp 18 OMP:MCC OMP:0000150
caro bila, uberon, wbbt, obci, xao, idomal, ddanat, nif, cl, aeo, covoc, zfa, enm, clm 17 CARO:MAH AEO:0000013
issn tgma, go, pato, nif, cco, tads, bto 17 ISSN:9781496335418 PATO:0001744
to pato, nif, to, peco 17 TO:moorel PECO:0007292
bspo nif, bspo, enm 16 BSPO:PATO_mtg_2009 BSPO:0000122
isbn uberon, tgma, idomal, nif, vsmo, tads, hp, fovt, mpath 15 ISBN:1555812384: VSMO:0002025
sgd fypo, fao, apo, nif, cl, so 14 SGD:jd SO:0002030
hpscreg cellosaurus 14 hPSCreg:NSI002-B Cellosaurus#CVCL:C0HP
mp uberon, obci, vt, nif, cl, dermo, clm 14 MP:anna UBERON:0012298
hp uberon, nif, covoc, eco, mp, clm 14 HPO:pr UBERON:0035639
eco hom, nif, ro, eco 14 ECO:RCT ECO:0007636
bcgo cellosaurus 13 BCGO:BCGO_0000108 Cellosaurus#CVCL:EG65
xao uberon, xao, go, nif, clm 13 XAO:00002785 GO:0039019
ma uberon, nif, cl, bspo, enm, envo, bcio, sdgio, clm, aeon 12 MA:ma CL:0000730
neurolex pato, nif, mp 12 neurolex:http://neurolex.org/wiki/Category:Nitrated_Molecular_Quality PATO:0002217
ro pato, hom, nif, ro, enm, sdgio, cmpo 12 OBO_REL:has_part PATO:0001555
mpath mpath 12 MPATH:<new dbxref> MPATH:770
nlm uberon, nif, clm 11 NLM:alimentary+system UBERON:0001007
meddra enm, efo, mondo 11 MedDRA:C1535926 MONDO:0700092
medgen efo, mondo 11 MEDGEN:C4750849 MONDO:0018273
spd spd 10 SPD:Raven_1986 SPD:0000312
genpept covoc 10 GenPept:YP_009725295 PR:P0DTC1-1
wikipedia.en dto, efo 10 Wikipedia:Single cell sequencing EFO:0008913
prosite go, nif, cco 9 Prosite:PDOC50021 GO:0051401
po to, po, peco 9 PO:cooperl TO:0000908
gemet envo 9 GEMET:http://www.eionet.europa.eu/gemet/concept/167 ENVO:02500011
fma uberon, nif, clao, clm 8 FMA:FMA UBERON:0006563
aeo uberon, nif, aeo, clm 8 AEO:000020 UBERON:0001013
fao fao, enm, envo 8 FAO:http://www.fao.org/soils-portal/soil-degradation-restoration/en/ ENVO:01000705
ido idomal, efo 8 IDO:497 IDOMAL:0001039
orcid zfa, fovt, mp 8 ORCID:orcid.org/0000-0003-3691-0324 MP:0020342
obi uberon, geno, pato, nif, vsmo, efo 7 OBI:MC UBERON:0012125
ec go, nif, cco 7 EC:1.5.1.33e GO:0047040
bfo idomal, vsmo 7 BFO:span:Process span:Process
neuronames uberon, nif 6 neuronames:3451&questID=1771 UBERON:8440026
doid doid, nif, vsmo, mondo 6 DOID: 2293 VSMO:0000055
jaxmice nif, efo, mp, so 6 JAX:8075 EFO:0001341
pmc nif, wbls, mp, mpath, so 6 PMC:3697962 WBls:0000802
dsmz cellosaurus 5 DSMZCellDive:RBL13 Cellosaurus#CVCL:S616
vhog uberon, nif, zfa 5 vHOG:curator ZFA:0005314
agricola chebi 5 AGR:ADL89034377 CHEBI:82843
chebi omp, xco, vsmo, dto 5 ChEBI: CHEBI:23092
chembl xco, covoc 5 ChEMBL:477164 COVOC:0030001
vto lpt, vt, lbo 5 VTO:CP LBO:0001090
goa go, nif 5 GOA:UniProtKB PR:000026537
hpa nif, cl, enm, clm 5 HPA:HPA CL:1001599
birnlex uberon, nif 4 BIRNLEX:Limbic_system UBERON:0000349
xenbase xao, nif, so 4 Xenbase:KAB XAO:0004539
umbbd.pathway go, nif 4 UM-BBD_pathwayID:2,4,5-t GO:0018980
umbbd.reaction go, nif, cco 4 UM-BBD_reactionID:1137 GO:0034813
ecg cmo 4 ECGOntology:ECG_000000011 CMO:0000278
refseq nif, hgnc 4 RefSeq:NM_021728. https://www.genenames.org/data/gene-symbol-report/#!/hgnc_id/HGNC:8522
tto tto, vto 4 TTO:curator TTO:1005211
cnrs ror 3 cnrs:5022 https://ror.org/04mp4zc06
caloha uberon, nif, clm 3 CALOHA:paula UBERON:0014454
fypo omp 3 FYPO:000064 OMP:0007701
envo pato, nif, envo 3 ENVO:pb PATO:0015017
kupo nif, cl, zfa 3 KUPO:SJ CL:0002518
reo cl, covoc, enm 3 ReO:mhb CL:0001034
pw pw 3 PW:InHouse3 PW:0000298
atc covoc 3 ATC: C09BA13 CHEBI:6960
peco peco 3 PECO:laura_moore PECO:0001058
wikidata ror 2 wikidata:https://www.wikidata.org/wiki/Q6156698 https://ror.org/0481m0575
fbdv bao, efo 2 FBdv:0005333 EFO:0001323
ecacc cellosaurus, bto 2 ECACC:94060812(2) Cellosaurus#CVCL:K375
insdc genepio 2 INSDC:specimen_voucher GENEPIO:0001722
pba uberon, nif 2 PBA:BN UBERON:0010011
metacyc.compound chebi, cco 2 MetaCyc:(1<arrow>right</arrow>4)-6-phospho-<stereo>alpha</stereo>-<stereo>D</stereo>-glucan CHEBI:134068
cellosaurus xco 2 Cellosaurus:CVCL_5712 XCO:0000835
vt ito, lpt 2 VT:1.1 Mathematics http://edamontology.org/topic_3315
edam ms 2 EDAM:0846 MS:1000864
uniprot.keyword go, nif 2 UniProtKB-KW:KW-984 GO:0039664
cgd fao, apo 2 CGD:doi FAO:0000042
qtldb cmo 2 QTLdb:animal_QTL_data CMO:0000436
biogrid apo 2 BioGRID:mcc APO:0000318
ncbi.gc nif, cl 2 GC:tfm CL:0002597
rfam nif, so 2 RFAM:jd SO:0001427
sao nif, cl 2 SAO:sao131261273 CL:1001571
sgn to, po 2 SGN:Naama_Menda PO:0008002
medlineplus efo, bto 2 MedlinePlus:A_service_of_the_U.S._National_Library_of_Medicine_From_the_National_Institutes_of_Health BTO:0005035
mfo efo, mfo 2 MFO:000290 EFO:0000791
cldb bto 2 HyperCLDB:http://bioinformatics.istge.it/ BTO:0005492
metabolights cellosaurus 1 MetaboLights:MTBL1140 Cellosaurus#CVCL:0493
skip cellosaurus 1 SKIP:SKIP00134O Cellosaurus#CVCL:A4NA
tngb cellosaurus 1 TNGB:TNGB-22276 Cellosaurus#CVCL:A5RS
apo omp 1 APO::0000051 OMP:0007101
vario cido 1 VariO:mv CIDO:0001172
ms vt 1 MS:RGD VT:0010239
taxrank taxrank 1 TAXRANK:curator TAXRANK:0000000
hao spd 1 HAO:HAO:0000353 SPD:0000820
brenda cmo 1 BRENDA:EC2.3.2.2 CMO:0001921
pirsf nif 1 PIRSF:PIRSF0000550 PR:000003057
olatdv olatdv 1 OlatDv:curators OlatDv:0000090
asin plana 1 ASIN:B000M4NK9M PLANA:0000473
pfam cco 1 Pfam:PF02174.5 GO:0051425
vo vsmo 1 VO:Authors VO:0000002
fbbt aeo 1 FBbt:DOS AEO:0000211
geo covoc 1 GEO:000000374 COVOC:0070006
zfs enm 1 ZFS:finishes RO:0002229
langual enm 1 LANGUAL:C0195 FOODON:00001216
reaxys dto 1 Reaxys:82337-46-0 CHEBI:34144
tads efo 1 TADS:000315 EFO:0000935
tgma efo 1 TGMA:000136 EFO:0000965
ncim efo 1 NCIm:CL455363 EFO:0003918
uniprot.disease efo 1 DI:00917 EFO:0010956
maxo efo 1 MAXO:748 EFO:0022844
disprot eco 1 DisProt:BalintMeszaros ECO:0006188
ero eco 1 ERO:0000329|URL:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3907272/ ECO:0007043
ena.embl eco 1 ENA:Peter ECO:0008014
bs envo 1 BS:bs ENVO:00000147
zea zea 1 ZEA:Provide a defn. for this. ZEA:0015028
fishbase.species bto 1 Fishbase:http://www.fishbase.org/Glossary/Glossary.cfm?TermEnglish=venom+apparatus BTO:0002065
nasc bto 1 NASC:The_European_Arabidopsis_Stock_Centre BTO:0003086
google.patent bto 1 Patent:CA_Patent_2469027 BTO:0004841
lonza bto 1 Lonza:www.lonza.com/ BTO:0006077
gard mondo 1 GARD:0003995-def MONDO:0044749
sibo sibo 1 SIBO:csmith SIBO:0000079