The latest export was made on 2025-02-04. The following software packages were used:
- bioontologies - 0.5.3-dev-a2eed901
- bioregistry - 0.12.0-dev-e83e2f4e
- pyobo - 0.12.0-dev-6a0f77c3
| Name | Version | License | Terms | Synonyms | Mappings | Relations | OBO | OWL | JSON | SSSOM | Nodes |
|---|---|---|---|---|---|---|---|---|---|---|---|
bigg.compartment |
1.6.0 | Custom | 22 | 0 | 18 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
bigg.metabolite |
1.6.0 | Custom | 15724 | 0 | 95484 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
bigg.model |
1.6.0 | Custom | 108 | 0 | 0 | 105 | OBO | OWL | JSON | Nodes | |
bigg.reaction |
1.6.0 | Custom | 28301 | 0 | 80920 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
ccle |
2019 | ODbL-1.0 | 1739 | 0 | 1700 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
cgnc |
CC-BY-4.0 | 26042 | 27245 | 41353 | 26042 | OBO | OWL | JSON | SSSOM | Nodes | |
chembl.compound |
35 | CC-BY-SA-3.0 | 42231 | 0 | 42231 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
chembl.target |
35 | CC-BY-SA-3.0 | 16003 | 0 | 9479 | 15758 | OBO | OWL | JSON | SSSOM | Nodes |
civic.gid |
2025-02-01 | CC0-1.0 | 883 | 2926 | 597 | 538 | OBO | OWL | JSON | SSSOM | Nodes |
clinicaltrials |
Custom | 522294 | 0 | 879540 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
complexportal |
2024-11-29 | CC0-1.0 | 4921 | 12240 | 10798 | 4921 | OBO | OWL | JSON | SSSOM | Nodes |
cpt |
164 | 0 | 164 | 0 | OBO | OWL | JSON | SSSOM | Nodes | ||
credit |
2022 | CC-BY-4.0 | 14 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
cvx |
279 | 225 | 3 | 0 | OBO | OWL | JSON | SSSOM | Nodes | ||
depmap |
24Q4 | CC-BY-4.0 | 1814 | 1831 | 2658 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
dictybase.gene |
CC-BY-SA-4.0 | 14222 | 16000 | 0 | 14222 | OBO | OWL | JSON | Nodes | ||
drugcentral |
54 | CC-BY-SA-4.0 | 4995 | 19053 | 76519 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
eccode |
2024-11-27 | CC-BY-4.0 | 8778 | 10483 | 1472 | 4483 | OBO | OWL | JSON | SSSOM | Nodes |
flybase |
2024_06 | CC-BY-4.0 | 35734 | 24915 | 0 | 35734 | OBO | OWL | JSON | Nodes | |
gard |
6131 | 20132 | 0 | 0 | OBO | OWL | JSON | Nodes | |||
geonames |
CC-BY-4.0 | 61550 | 1514 | 0 | 60953 | OBO | OWL | JSON | Nodes | ||
geonames.feature |
CC-BY-4.0 | 683 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
gtdb |
220 | CC-BY-SA-4.0 | 4178013 | 0 | 596859 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
hgnc |
2024-12-03 | CC0-1.0 | 43839 | 105407 | 259747 | 151570 | OBO | OWL | JSON | SSSOM | Nodes |
hgnc.genegroup |
2024-12-03 | CC0-1.0 | 1834 | 1160 | 0 | 1847 | OBO | OWL | JSON | Nodes | |
icd10 |
Custom | 12483 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
icd11 |
CC-BY-ND-3.0-IGO | 69477 | 46545 | 29474 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
interpro |
103.0 | CC0-1.0 | 47049 | 0 | 0 | 30269 | OBO | OWL | JSON | Nodes | |
itis |
2025-01-24 | CC0-1.0 | 963716 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
kegg.genome |
113.0 | Custom | 10959 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
mesh |
2025 | CC0-1.0 | 355011 | 636462 | 0 | 0 | OBO | OWL | JSON | Nodes | |
mgi |
6.24 | CC-BY-4.0 | 719756 | 259761 | 168405 | 930562 | OBO | OWL | JSON | SSSOM | Nodes |
mirbase |
22.1 | public domain | 38589 | 1441 | 8732 | 69253 | OBO | OWL | JSON | SSSOM | Nodes |
mirbase.family |
22.1 | public domain | 19907 | 0 | 0 | 19907 | OBO | OWL | JSON | Nodes | |
mirbase.mature |
22.1 | public domain | 49168 | 7179 | 0 | 0 | OBO | OWL | JSON | Nodes | |
msigdb |
2024.1 | CC-BY-4.0 | 33519 | 0 | 13849 | 33519 | OBO | OWL | JSON | SSSOM | Nodes |
ncbi.gc |
4.6 | public domain | 28 | 0 | 2 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
nihreporter.project |
2825097 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |||
nlm |
public domain | 41583 | 83576 | 50610 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
nlm.publisher |
public domain | 452 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
npass |
2.0 | CC-BY-NC | 96420 | 22501 | 103082 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
omim.ps |
2025-02-03 | Custom | 588 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
pathbank |
2.0 | ODbL-1.0 | 110242 | 0 | 110242 | 2455553 | OBO | OWL | JSON | SSSOM | Nodes |
pfam |
37.2 | CC0-1.0 | 24076 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
pfam.clan |
37.2 | CC0-1.0 | 769 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
pharmgkb.disease |
CC-BY-SA-4.0 | 1741 | 16189 | 8955 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
pharmgkb.drug |
CC-BY-SA-4.0 | 5082 | 0 | 26461 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
pharmgkb.gene |
CC-BY-SA-4.0 | 25041 | 107948 | 128321 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
pharmgkb.pathways |
CC-BY-SA-4.0 | 143 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
pharmgkb.variant |
CC-BY-SA-4.0 | 7038 | 0 | 7038 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
pid.pathway |
1.0.0 | 210 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
pombase |
2025-02-01 | CC-BY-4.0 | 12684 | 2631 | 0 | 12684 | OBO | OWL | JSON | Nodes | |
reactome |
91 | CC0-1.0 | 22608 | 0 | 0 | 1164839 | OBO | OWL | JSON | Nodes | |
rgd |
2025-01-31 | CC-BY-4.0 | 61331 | 139562 | 106749 | 61331 | OBO | OWL | JSON | SSSOM | Nodes |
rhea |
136 | CC-BY-4.0 | 68524 | 0 | 19769 | 601285 | OBO | OWL | JSON | SSSOM | Nodes |
ror |
1.36 | CC0-1.0 | 107096 | 105380 | 237176 | 155567 | OBO | OWL | JSON | SSSOM | Nodes |
sgd |
R64-5-1 | CC-BY-4.0 | 6600 | 11109 | 0 | 6600 | OBO | OWL | JSON | Nodes | |
signor |
2025-01-01 | CC-BY-NC-4.0 | 2338 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
slm |
2025-02-04 | CC-BY-4.0 | 779249 | 1344722 | 635636 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
sty |
2024AB | 127 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
uniprot |
2024_06 | CC-BY-4.0 | 572619 | 0 | 322825 | 1036159 | OBO | OWL | JSON | SSSOM | Nodes |
uniprot.ptm |
CC-BY-4.0 | 714 | 0 | 1543 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
wikipathways |
20250110 | CC0-1.0 | 1871 | 0 | 0 | 1871 | OBO | OWL | JSON | Nodes | |
zfin |
2025-02-03 | CC-BY-4.0 | 195896 | 0 | 52817 | 268914 | OBO | OWL | JSON | SSSOM | Nodes |