The latest export was made on 2025-10-31. The following software packages were used:
- bioontologies - 0.7.5-dev-bc0787bb
- bioregistry - 0.13.1-dev-1aa39a51
- bioversions - 0.8.173-dev-9a10ab1f
- curies - 0.12.4-UNHASHED
- obographs - 0.0.8-UNHASHED
- pyobo - 0.12.13-dev-207b46e9
- ssslm - 0.1.2-UNHASHED
- sssom-pydantic - 0.1.1-UNHASHED
| Name | Version | License | Terms | Synonyms | Mappings | Relations | OBO | OWL | JSON | SSSOM | Nodes |
|---|---|---|---|---|---|---|---|---|---|---|---|
bigg.compartment |
1.6.0 | Custom | 22 | 0 | 18 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
bigg.metabolite |
1.6.0 | Custom | 24809 | 0 | 79763 | 15721 | OBO | OWL | JSON | SSSOM | Nodes |
bigg.model |
1.6.0 | Custom | 108 | 0 | 0 | 105 | OBO | OWL | JSON | Nodes | |
bigg.reaction |
1.6.0 | Custom | 28301 | 0 | 79068 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
ccle |
2019 | ODbL-1.0 | 1739 | 0 | 1700 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
cgnc |
CC-BY-4.0 | 26085 | 27342 | 41411 | 26085 | OBO | OWL | JSON | SSSOM | Nodes | |
chembl.compound |
36 | CC-BY-SA-3.0 | 42299 | 0 | 42299 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
chembl.target |
36 | CC-BY-SA-3.0 | 17803 | 0 | 9472 | 17554 | OBO | OWL | JSON | SSSOM | Nodes |
civic.gid |
2025-10-01 | CC0-1.0 | 910 | 2937 | 601 | 581 | OBO | OWL | JSON | SSSOM | Nodes |
clinicaltrials |
Custom | 522294 | 0 | 879540 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
complexportal |
2025-08-08 | CC0-1.0 | 5171 | 12570 | 11997 | 5171 | OBO | OWL | JSON | SSSOM | Nodes |
cpt |
168 | 0 | 168 | 0 | OBO | OWL | JSON | SSSOM | Nodes | ||
credit |
2022 | CC-BY-4.0 | 14 | 0 | 1 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
cvx |
287 | 234 | 3 | 0 | OBO | OWL | JSON | SSSOM | Nodes | ||
depmap |
25Q3 | CC-BY-4.0 | 1814 | 1831 | 2658 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
dictybase.gene |
CC-BY-SA-4.0 | 14222 | 16000 | 0 | 14222 | OBO | OWL | JSON | Nodes | ||
drugcentral |
54 | CC-BY-SA-4.0 | 4995 | 19053 | 74729 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
ec |
2025-04-09 | CC-BY-4.0 | 8809 | 10503 | 1473 | 4526 | OBO | OWL | JSON | SSSOM | Nodes |
flybase |
2025_04 | CC-BY-4.0 | 35736 | 25086 | 0 | 35736 | OBO | OWL | JSON | Nodes | |
gard |
6109 | 27365 | 0 | 0 | OBO | OWL | JSON | Nodes | |||
geonames |
CC-BY-4.0 | 62131 | 1514 | 0 | 61535 | OBO | OWL | JSON | Nodes | ||
geonames.feature |
CC-BY-4.0 | 683 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
gtdb |
226 | CC-BY-SA-4.0 | 5127325 | 0 | 732475 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
hgnc |
2025-10-07 | CC0-1.0 | 44537 | 106173 | 269237 | 199102 | OBO | OWL | JSON | SSSOM | Nodes |
hgnc.genegroup |
2025-10-07 | CC0-1.0 | 1980 | 3212 | 0 | 1993 | OBO | OWL | JSON | Nodes | |
icd10 |
2019 | Custom | 12483 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
icd11 |
CC-BY-ND-3.0-IGO | 71175 | 48949 | 29451 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
iconclass |
43539 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |||
interpro |
107.0 | CC0-1.0 | 49674 | 0 | 0 | 30253 | OBO | OWL | JSON | Nodes | |
itis |
2025-09-24 | CC0-1.0 | 981990 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
kegg.genome |
116.0 | Custom | 11592 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
mesh |
2025 | CC0-1.0 | 355011 | 636462 | 0 | 0 | OBO | OWL | JSON | Nodes | |
mgi |
6.24 | CC-BY-4.0 | 661778 | 260089 | 189484 | 997093 | OBO | OWL | JSON | SSSOM | Nodes |
mirbase |
22.1 | public domain | 38589 | 1441 | 8644 | 69253 | OBO | OWL | JSON | SSSOM | Nodes |
mirbase.family |
22.1 | public domain | 19907 | 0 | 0 | 19907 | OBO | OWL | JSON | Nodes | |
mirbase.mature |
22.1 | public domain | 49168 | 7179 | 0 | 0 | OBO | OWL | JSON | Nodes | |
msigdb |
2025.1 | CC-BY-4.0 | 33784 | 0 | 13326 | 33784 | OBO | OWL | JSON | SSSOM | Nodes |
ncbi.gc |
4.6 | public domain | 28 | 0 | 5 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
nihreporter.project |
2825097 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |||
nlm |
public domain | 39390 | 78198 | 49549 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
nlm.publisher |
public domain | 447 | 0 | 3 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
npass |
2.0 | CC-BY-NC | 96420 | 22501 | 103082 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
omim.ps |
2025-10-30 | Custom | 600 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
pathbank |
2.0 | ODbL-1.0 | 110242 | 0 | 110242 | 2455537 | OBO | OWL | JSON | SSSOM | Nodes |
pfam |
38.0 | CC0-1.0 | 25545 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
pfam.clan |
38.0 | CC0-1.0 | 796 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
pharmgkb.disease |
CC-BY-SA-4.0 | 1612 | 15745 | 8791 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
pharmgkb.drug |
CC-BY-SA-4.0 | 5134 | 0 | 26653 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
pharmgkb.gene |
CC-BY-SA-4.0 | 25041 | 107947 | 229255 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
pharmgkb.pathways |
CC-BY-SA-4.0 | 143 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
pharmgkb.variant |
CC-BY-SA-4.0 | 7038 | 0 | 7038 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
pid.pathway |
1.0.0 | 210 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
pombase |
2025-10-01 | CC-BY-4.0 | 12685 | 2640 | 0 | 12685 | OBO | OWL | JSON | Nodes | |
reactome |
94 | CC0-1.0 | 23157 | 0 | 0 | 23157 | OBO | OWL | JSON | Nodes | |
rgd |
2025-10-25 | CC-BY-4.0 | 61463 | 140164 | 98868 | 61463 | OBO | OWL | JSON | SSSOM | Nodes |
rhea |
139 | CC-BY-4.0 | 71132 | 0 | 20093 | 617584 | OBO | OWL | JSON | SSSOM | Nodes |
ror |
1.36 | CC0-1.0 | 107096 | 105380 | 237173 | 155567 | OBO | OWL | JSON | SSSOM | Nodes |
sgd |
R64-5-1 | CC-BY-4.0 | 6600 | 11109 | 0 | 6600 | OBO | OWL | JSON | Nodes | |
signor |
2025-10-01 | CC-BY-NC-4.0 | 2380 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
slm |
2025-05-13 | CC-BY-4.0 | 779249 | 1344722 | 635632 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
spdx |
88388db | 712 | 712 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
sty |
2025AA | 127 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
uniprot |
2025_04 | CC-BY-4.0 | 573661 | 0 | 342066 | 1033645 | OBO | OWL | JSON | SSSOM | Nodes |
uniprot.ptm |
2025_04 | CC-BY-4.0 | 718 | 0 | 1548 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
wikipathways |
20251010 | CC0-1.0 | 1939 | 0 | 0 | 1939 | OBO | OWL | JSON | Nodes | |
zfin |
2025-10-30 | CC-BY-4.0 | 201492 | 0 | 53409 | 282390 | OBO | OWL | JSON | SSSOM | Nodes |