The latest export was made on 2024-12-10. The following software packages were used:
- bioontologies - 0.5.3-dev-a2eed901
- bioregistry - 0.11.27-dev-214a4fb7
- pyobo - 0.12.0-dev-e4f823b0
| Name | Version | Terms | Synonyms | Mappings | Relations | OBO | OWL | JSON | SSSOM | Nodes |
|---|---|---|---|---|---|---|---|---|---|---|
bigg.metabolite |
1.6.0 | 15724 | 0 | 78126 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
bigg.model |
1.6.0 | 108 | 0 | 0 | 105 | OBO | OWL | JSON | Nodes | |
bigg.reaction |
1.6.0 | 28301 | 0 | 72720 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
cgnc |
26021 | 27221 | 41332 | 26021 | OBO | OWL | JSON | SSSOM | Nodes | |
cpt |
161 | 0 | 161 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
credit |
2022 | 14 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
cvx |
279 | 249 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
dictybase.gene |
14222 | 16000 | 0 | 14222 | OBO | OWL | JSON | Nodes | ||
drugcentral |
54 | 4995 | 19053 | 76519 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
eccode |
2024-11-27 | 8778 | 10483 | 0 | 4483 | OBO | OWL | JSON | Nodes | |
flybase |
2024_05 | 35702 | 24869 | 0 | 35702 | OBO | OWL | JSON | Nodes | |
gard |
6236 | 9492 | 0 | 0 | OBO | OWL | JSON | Nodes | ||
gtdb |
220 | 4178013 | 0 | 596859 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
hgnc |
2024-12-03 | 43839 | 105407 | 259747 | 151570 | OBO | OWL | JSON | SSSOM | Nodes |
hgnc.genegroup |
2024-12-03 | 1815 | 1160 | 0 | 1828 | OBO | OWL | JSON | Nodes | |
interpro |
103.0 | 47049 | 0 | 0 | 30269 | OBO | OWL | JSON | Nodes | |
kegg.genome |
112.1 | 10813 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
mesh |
2024 | 354471 | 634143 | 0 | 0 | OBO | OWL | JSON | Nodes | |
mgi |
6.24 | 719756 | 259761 | 168405 | 930562 | OBO | OWL | JSON | SSSOM | Nodes |
mirbase |
22.1 | 38589 | 1441 | 8814 | 69253 | OBO | OWL | JSON | SSSOM | Nodes |
mirbase.family |
22.1 | 19907 | 0 | 0 | 19907 | OBO | OWL | JSON | Nodes | |
mirbase.mature |
22.1 | 49168 | 7179 | 0 | 0 | OBO | OWL | JSON | Nodes | |
msigdb |
2024.1 | 33519 | 0 | 13849 | 33519 | OBO | OWL | JSON | SSSOM | Nodes |
npass |
2.0 | 96420 | 22501 | 103085 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
pathbank |
2.0 | 110242 | 0 | 110242 | 2455553 | OBO | OWL | JSON | SSSOM | Nodes |
pfam |
37.1 | 23794 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
pfam.clan |
37.1 | 751 | 0 | 0 | 0 | OBO | OWL | JSON | Nodes | |
pombase |
2024-12-01 | 12684 | 2624 | 0 | 12684 | OBO | OWL | JSON | Nodes | |
reactome |
91 | 22608 | 0 | 0 | 1164839 | OBO | OWL | JSON | Nodes | |
rgd |
2024-12-06 | 61331 | 139395 | 105984 | 61331 | OBO | OWL | JSON | SSSOM | Nodes |
rhea |
136 | 68524 | 0 | 19769 | 601285 | OBO | OWL | JSON | SSSOM | Nodes |
sgd |
R64-5-1 | 6600 | 11109 | 0 | 6600 | OBO | OWL | JSON | Nodes | |
slm |
2024-12-10 | 779249 | 1344722 | 635636 | 0 | OBO | OWL | JSON | SSSOM | Nodes |
uniprot |
2024_06 | 572619 | 0 | 322825 | 1036159 | OBO | OWL | JSON | SSSOM | Nodes |
uniprot.ptm |
713 | 0 | 1541 | 0 | OBO | OWL | JSON | SSSOM | Nodes | |
wikipathways |
20241210 | 1871 | 0 | 0 | 1871 | OBO | OWL | JSON | Nodes | |
zfin |
2024-12-09 | 192659 | 0 | 24770 | 265664 | OBO | OWL | JSON | SSSOM | Nodes |