A repository for the TSV-based, decentralized, community-curated curation of terms, properties, and relations that get turned into OBO, OWL, and OBO Graph JSON.
bioregistry:debio
| Type | Local Identifier | Name | Definition |
|---|---|---|---|
| TypeDef | 0000001 | gene product is a member of | |
| TypeDef | 0000002 | has mature miRNA | |
| TypeDef | 0000003 | species specific | X speciesSpecific Y means that Y is a general phenomena, like a pathway, and X is the version that appears in a species. X should state which species with RO:0002162 (in taxon) |
| TypeDef | 0000004 | Antibody has target | |
| Property | 0000005 | locus group | |
| TypeDef | 0000006 | has salt | |
| TypeDef | 0000007 | has left-to-right reaction | X ltr Y means reaction X of undetermined direction has a left-to-right reaction Y. Relevant for Rhea. |
| TypeDef | 0000008 | has right-to-left reaction | X rtl Y means reaction X of undetermined direction has a right-to-left reaction Y. Relevant for Rhea. |
| TypeDef | 0000009 | has bi-directional reaction | X bi Y means reaction X of undetermined direction has a bidirectional reaction Y. Relevant for Rhea. |
| TypeDef | 0000010 | is conjugate base of | X is conjugate base of Y typically means that X is a deprotonated form of Y |
| TypeDef | 0000011 | is conjugate acid of | X is conjugate acid of Y typically means that Y is a protonated form of X |
| TypeDef | 0000012 | is enantiomer of | X and Y are in an enantiomeric relationship if flipping all stereocenters of X results in Y |
| TypeDef | 0000013 | is tautomer of | X and Y are tautomers if they are different realizations of the resonance structure of the same molecule |
| TypeDef | 0000014 | has parent hydride | X has parent hydride Y if the substituents on X are replaced with hydrogens. E.g., SbCl3 has parent hydride SbH3 |
| TypeDef | 0000015 | has functional parent | X has functional parent Y if X is a derivative (e.g., a salt) of Y. E.g., bepridil hydrochloride has functional parent bepridil |
| Property | 0000016 | monoisotopic mass | |
| Property | 0000017 | charge | |
| Property | 0000018 | formula | |
| Property | 0000019 | mass | |
| Property | 0000020 | InChI | |
| Property | 0000021 | InChI Key | |
| Property | 0000022 | smiles | |
| Property | 0000023 | has taxonomy rank | |
| Property | 0000024 | has species group | |
| TypeDef | 0000025 | has origin | Related to sequences |
| Property | 0000026 | IUPAC Name | |
| TypeDef | 0000027 | is substituent group from | connects a group to its chemical entity (e.g., carboyxylic acid group to acetate) |
| Property | 0000028 | International Nonproprietary Name | |
| TypeDef | 0000029 | has citation | connects any entity to a document (e.g., with a pubmed, doi, pmc, or arxiv identifier) |
| Property | 0000030 | has related symbol | This term is most applicable to terms appearing in mathematical equations (e.g., rate laws) and connects the base concept to a symbol that has been used to represent it in a synonym. |
| Property | 0000031 | has related LaTeX | This term is most applicable to terms appearing in mathematical equations (e.g., rate laws) and connects the base concept to a the latex representing the symbol that has been used to represent it in a synonym. |
| TypeDef | 0000032 | causes side effect | connects any entity a side effect that it causes. For example, VO:0000112 (Tripedia) induces the side effect HP:0002013 (Vomiting) |
| TypeDef | 0000033 | pathogen has host | connects a pathogen (NCBITaxon) to a host (NCBITaxon) |
| TypeDef | 0000034 | vaccine has gene engineering | connects a vaccine (VO) to a gene that has been engineered. Most applicable to OMVs, Nanosponges, and nanolipoparticles (NLP). |
| TypeDef | 0000035 | has intervention | connects a clinical trial to an intervention it investigates |
| TypeDef | 0000036 | has condition | connects a clinical trial to a condition it investigates |
| TypeDef | 0000037 | has platform | connects a vaccine to its platform |
| TypeDef | 0000038 | mentioned in | connects any entity to an article in which it's mentioned, e.g., extracted from NER |
| TypeDef | 0000039 | annotated with | connects an article to a term it was annotated with (i.e. pubmed annotated with MeSH term) |
| TypeDef | 0000040 | related trial | connects a related trial registered in a different registry |
| TypeDef | 0000041 | prevents infection | Sibling relationship to vo:0001011 (immunizes against disease) |
| Property | 0000042 | constant has value | Connects an individual representing a physical constant to its numeric value |
| Property | 0000043 | constant has formula | Connects an individual representing a physical constant to its formula |
| TypeDef | 0000044 | pathogen defines vaccine class | A relationship where the domain is a taxon and the range is a vaccine family. E.g., Severe acute respiratory syndrome coronavirus 2 (ncbitaxon:2697049) is the pathogen that defines vaccine class COVID-19 vaccine (VO:0004908). Sort of an inverse of VO:0003355, but more specific |
| TypeDef | 0000045 | vector vaccine uses pathogen as vector | connects a vaccine platform that is a vector vaccine to a pathogen that it uses as a vector |
| TypeDef | 0000046 | search results in | connects any entity to an article that a search over the entity label or its synonyms produces |
| TypeDef | 0000047 | reaction enabled by molecular function | connects a reaction (e.g., from Rhea) to a molecular function (e.g., from GO) that corresponds |
| TypeDef | 0000048 | trial occurred in country | connects a trial (e.g., from ClinicalTrials.gov) to a country (e.g., from GeoNames) based on where the trial took place |
| TypeDef | 0000049 | has active license from | connects a vaccine (e.g., from VO) to a country or organization where it has an active license through standard approval |
| TypeDef | 0000050 | has active EUA license from | connects a vaccine (e.g., from VO) to a country or organization where it has an active license through emergency use authorization (EUA) |